Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_M14
(572 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80814-5|AAB37991.1| 368|Caenorhabditis elegans Cop-9 signaloso... 311 3e-85
U00032-7|AAA50633.1| 319|Caenorhabditis elegans Hypothetical pr... 138 2e-33
AF077534-8|AAC26287.1| 312|Caenorhabditis elegans Proteasome re... 137 5e-33
AF067219-13|AAC17024.1| 362|Caenorhabditis elegans Proteasome r... 39 0.002
Z47808-5|CAA87773.1| 294|Caenorhabditis elegans Hypothetical pr... 33 0.14
U41263-8|AAC24430.1| 455|Caenorhabditis elegans Hypothetical pr... 31 0.77
U41263-7|AAC24431.1| 462|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z70752-3|CAA94755.3| 654|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z81041-6|CAB02788.1| 336|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z71266-3|CAA95840.1| 292|Caenorhabditis elegans Hypothetical pr... 27 7.2
DQ340625-1|ABC65813.1| 292|Caenorhabditis elegans chondroitin p... 27 7.2
Z74028-2|CAA98428.1| 1058|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 27 9.5
U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical pr... 27 9.5
AC006648-12|AAF39861.4| 418|Caenorhabditis elegans Btb and math... 27 9.5
>U80814-5|AAB37991.1| 368|Caenorhabditis elegans Cop-9 signalosome
subunit protein 5 protein.
Length = 368
Score = 311 bits (763), Expect = 3e-85
Identities = 138/187 (73%), Positives = 160/187 (85%)
Frame = +1
Query: 10 YDKKQQQDILAAKPWEKDPHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKVDANTM 189
Y+ KQQ +I AKPW+KDPH+FK IKISA+ALLKM MHA+ GG LE+MGLL G++DAN+
Sbjct: 32 YNNKQQVEIRNAKPWDKDPHYFKQIKISAIALLKMTMHAKRGGNLEIMGLLQGRIDANSF 91
Query: 190 IVMDSFALPVEGTETRVNAQAQAYEYMTAYIEAAKQVGRHENAIGWYHSHPGYGCWLSGI 369
I++D FALPVEGTETRVNAQAQAYEYMT Y E GR E +GWYHSHPGYGCWLSGI
Sbjct: 92 IILDVFALPVEGTETRVNAQAQAYEYMTVYSEMCDTEGRKEKVVGWYHSHPGYGCWLSGI 151
Query: 370 DVSTQMLNQNFQEPFVAIVIDPVRTISAGKVCLGAFRTYPKGYKPANEEPSEYQTIPLNK 549
DVSTQ LNQ FQEP+VAIVIDP+RT+SAGKV +GAFRTYP+GY+P ++ PSEYQ+IPL K
Sbjct: 152 DVSTQTLNQKFQEPWVAIVIDPLRTMSAGKVDIGAFRTYPEGYRPPDDVPSEYQSIPLAK 211
Query: 550 IEDFGVH 570
IEDFGVH
Sbjct: 212 IEDFGVH 218
>U00032-7|AAA50633.1| 319|Caenorhabditis elegans Hypothetical
protein F37A4.5 protein.
Length = 319
Score = 138 bits (335), Expect = 2e-33
Identities = 70/141 (49%), Positives = 94/141 (66%), Gaps = 1/141 (0%)
Frame = +1
Query: 64 PHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRV 240
P + + IS+LALLKM+ HARSG LEVMGL+LG VD T+ V D FA+P GT V
Sbjct: 23 PDTSETVNISSLALLKMLRHARSGIPLEVMGLMLGDFVDDYTINVTDVFAMPQSGTSVTV 82
Query: 241 NAQAQAYEYMTAYIEAAKQVGRHENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVA 420
+ Y+ T +++ K VGR EN +GWYHSHPG+GCWLS +DV+TQ + VA
Sbjct: 83 ESVDPVYQ--TKHMDLLKLVGRTENVVGWYHSHPGFGCWLSSVDVNTQQSFEALHPRAVA 140
Query: 421 IVIDPVRTISAGKVCLGAFRT 483
+V+DP++++ GKV L AFR+
Sbjct: 141 VVVDPIQSVK-GKVMLDAFRS 160
>AF077534-8|AAC26287.1| 312|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 11 protein.
Length = 312
Score = 137 bits (332), Expect = 5e-33
Identities = 67/149 (44%), Positives = 97/149 (65%), Gaps = 1/149 (0%)
Frame = +1
Query: 82 IKISALALLKMVMHARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRVNAQAQA 258
+ IS+LALLKM+ H R+G +EVMGL+LG+ VD T+ V+D FA+P GT V A
Sbjct: 33 VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVIDVFAMPQSGTGVSVEAVDPV 92
Query: 259 YEYMTAYIEAAKQVGRHENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPV 438
++ ++ KQ GR E +GWYHSHPG+GCWLSG+D++TQ + + VA+V+DP+
Sbjct: 93 FQ--AKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSDRAVAVVVDPI 150
Query: 439 RTISAGKVCLGAFRTYPKGYKPANEEPSE 525
+++ GKV + AFRT N+EP +
Sbjct: 151 QSVK-GKVVIDAFRTINPQSMALNQEPRQ 178
>AF067219-13|AAC17024.1| 362|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 8 protein.
Length = 362
Score = 39.1 bits (87), Expect = 0.002
Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Frame = +1
Query: 82 IKISALALLKMVMH----ARSGGTLEVMGLLLGKVDAN-TMIVMDSFALPVEGTETRVNA 246
+ + L LL +V H +++ V+G+LLG + + T+ + +SFA+P + + +
Sbjct: 41 VTVHPLVLLSVVDHFNRVSKTQSVKRVVGVLLGSMKKDKTLDIGNSFAVPFDEDDKDKST 100
Query: 247 QAQAYEYMTAYIEAAKQVGRHENAIGWYHSHP 342
+Y+ + +V E +GWYH+ P
Sbjct: 101 WFLDMDYLESMYGMFYKVAAKEKIVGWYHTGP 132
>Z47808-5|CAA87773.1| 294|Caenorhabditis elegans Hypothetical
protein D2013.7 protein.
Length = 294
Score = 33.1 bits (72), Expect = 0.14
Identities = 18/69 (26%), Positives = 34/69 (49%)
Frame = +1
Query: 124 ARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQAYEYMTAYIEAAKQVG 303
A++ G + MG L+G + ++ V + FA+P + + Q + M I A K+
Sbjct: 29 AKNTGQEKCMGTLMGYYEKGSIQVTNCFAIPFNESNDDLEIDDQFNQQM---ISALKKTS 85
Query: 304 RHENAIGWY 330
+E +GW+
Sbjct: 86 PNEQPVGWF 94
>U41263-8|AAC24430.1| 455|Caenorhabditis elegans Hypothetical
protein T19D12.10 protein.
Length = 455
Score = 30.7 bits (66), Expect = 0.77
Identities = 15/53 (28%), Positives = 30/53 (56%)
Frame = -3
Query: 339 VTVIPTNGILMTAHLFCCFNICCHIFVSLSLCIDTSFSTFYRESKRVHNNHSV 181
+ +P +GIL + L + +++ ++ + T+F F+R+S +VH N SV
Sbjct: 169 IITMPLSGILCESSLG--WRSIYYLYGGVAFLVTTAFFAFFRDSAQVHRNVSV 219
>U41263-7|AAC24431.1| 462|Caenorhabditis elegans Hypothetical
protein T19D12.9 protein.
Length = 462
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = -3
Query: 348 VPRVTVIPTNGILMTAHLFCCFNICCHIFVSLSLCIDTSFSTFYRESKRVHNNHS 184
+ + ++P +G+L + L + ++F +S+ F TF+R+S VH N S
Sbjct: 171 ISSIILMPVSGVLCESQLG--WRYIFYLFGGISVIAHIIFFTFFRDSATVHRNVS 223
>Z70752-3|CAA94755.3| 654|Caenorhabditis elegans Hypothetical
protein F25B3.3 protein.
Length = 654
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 270 HIFVSLSLCIDTSFSTFYRESKRVHNNHSVC 178
H ++S SL + T F FY+E++ V +VC
Sbjct: 48 HQWLSDSLSLITHFVNFYQETRNVEQREAVC 78
>Z81041-6|CAB02788.1| 336|Caenorhabditis elegans Hypothetical
protein C27A7.7 protein.
Length = 336
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/48 (22%), Positives = 24/48 (50%)
Frame = -3
Query: 333 VIPTNGILMTAHLFCCFNICCHIFVSLSLCIDTSFSTFYRESKRVHNN 190
++ T+ ++ L CF IC I++ ++ + + +KR+H N
Sbjct: 195 ILRTSTAIIIVTLISCFTICFCIWIGWTIQSKLKVADMSKTTKRMHRN 242
>Z71266-3|CAA95840.1| 292|Caenorhabditis elegans Hypothetical
protein R06C7.4 protein.
Length = 292
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 151 MGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQA 258
+G+L V AN+ +V+DS L + TET A A
Sbjct: 151 LGILSNIVLANSQMVLDSARLSLNETETETGTSAPA 186
>DQ340625-1|ABC65813.1| 292|Caenorhabditis elegans chondroitin
proteoglycan-3 protein.
Length = 292
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 151 MGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQA 258
+G+L V AN+ +V+DS L + TET A A
Sbjct: 151 LGILSNIVLANSQMVLDSARLSLNETETETGTSAPA 186
>Z74028-2|CAA98428.1| 1058|Caenorhabditis elegans Hypothetical protein
C14C10.4 protein.
Length = 1058
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +2
Query: 464 ALVHSEHIQRVTNLLMKNHLNIK 532
AL+HS ++QR +L+ + +LNI+
Sbjct: 942 ALIHSNNMQRARSLIERQNLNIE 964
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
F25H8.3 protein.
Length = 2165
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +3
Query: 432 PCQNYFSWKSLPW--CIQNISKGLQTC**RTI*ISNDST*QNRRFRCT 569
PC + F W PW C +N +G++ R ++ND + R +CT
Sbjct: 1879 PCDSEFKWSFGPWGECSKNCGQGIRRR--RVKCVANDGR-RVERVKCT 1923
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +3
Query: 432 PCQNYFSWKSLPW--CIQNISKGLQTC**RTI*ISNDST*QNRRFRCT 569
PC + F W PW C +N +G++ R ++ND + R +CT
Sbjct: 1879 PCDSEFKWSFGPWGECSKNCGQGIRRR--RVKCVANDGR-RVERVKCT 1923
>U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical
protein F32A5.2a protein.
Length = 1000
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 227 VPSTGRANESITIIVFASTLPRSNPITSKVPP 132
+P+T R ++T +T P+S T+ VPP
Sbjct: 189 IPTTTRIPTTVTTTTETTTTPQSTTTTTTVPP 220
>AC006648-12|AAF39861.4| 418|Caenorhabditis elegans Btb and math
domain containingprotein 19 protein.
Length = 418
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3
Query: 204 RVHNNHSVCVNFTQEQSHNF 145
++H H C NF E+S NF
Sbjct: 348 QIHRLHQKCANFLSEKSENF 367
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,967,257
Number of Sequences: 27780
Number of extensions: 300654
Number of successful extensions: 864
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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