Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_M13
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c...    29   0.75 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.7  
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    27   2.3  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    27   3.0  
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    26   4.0  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    26   5.3  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   9.2  
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy...    25   9.2  

>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 465

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +2

Query: 53  VTCASHGDLPRVSPLASHAHATAVGLVSNLK 145
           ++  SH D+ ++  + +H+H   +GL  NL+
Sbjct: 3   ISVTSHNDVSKLERIGAHSHIKGIGLNDNLE 33


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 28/124 (22%), Positives = 45/124 (36%)
 Frame = -2

Query: 590 STSQLIQPRRCTRSEPTTRLSVXXXXXXXXXXXXXXXXXXRTSCAESPLRFSCAXXXXXX 411
           STS  I     + S PT+  S                     S + S   FS +      
Sbjct: 285 STSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSS---FSSSPTSSSS 341

Query: 410 XXXXPSACTSSTSIRANSSLCSIRNSTRNSVRVSTGPAGRIGPLTLSRIDPPRWAATRAV 231
                S+  SS+S  + +S  S ++S+  S  VS+  +     LT S     R A++ + 
Sbjct: 342 TISSSSSSPSSSSFSSTTS--SSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSH 399

Query: 230 GPSV 219
             S+
Sbjct: 400 SSSL 403


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +2

Query: 80  PRVSPLASHAHATAVGLVSNLKKEFE-ARSESETGRRMDSRVRPPTTEQRDRPPASPPTG 256
           PR++     +   ++G  ++ K + +  RS S++    ++ V+P   E  D P +SP   
Sbjct: 406 PRLNSTVIQSKWDSLGHTASPKMQTQPVRSVSQSSATTETNVKPTKEENADVPVSSPDYL 465

Query: 257 EDL 265
           +DL
Sbjct: 466 KDL 468


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 134  SNLKKEFEARSESETGRRMDSRVRPPTTEQRDRP 235
            SNL++E E R  S    R D R    + +QRDRP
Sbjct: 1579 SNLREEDE-RENSRRRARQDDRRDRDSRQQRDRP 1611


>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = +2

Query: 137 NLKKEFEARSESETGRR---MDS-RVRPPTTEQRDRPPASP 247
           +L K F  RSE +T R+    DS +  P     RDRPP  P
Sbjct: 280 SLNKSFATRSEPQTPRKNKIRDSLQSSPLNFPPRDRPPLIP 320


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = -1

Query: 408 LPSTVSLHFF-DIDSCEL-FPLLDSKL 334
           LP TVSLHF  ++ S    +PLL SK+
Sbjct: 401 LPKTVSLHFLREVQSLVFRYPLLHSKI 427


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 15/85 (17%), Positives = 32/85 (37%)
 Frame = -2

Query: 551 SEPTTRLSVXXXXXXXXXXXXXXXXXXRTSCAESPLRFSCAXXXXXXXXXXPSACTSSTS 372
           S P + ++                    TS + +PL    +           ++  S+++
Sbjct: 438 STPLSSVNSTTATSASSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNSTSA 497

Query: 371 IRANSSLCSIRNSTRNSVRVSTGPA 297
             A+S+  +  NST ++   ST P+
Sbjct: 498 TSASSTPLTSANSTTSTSVSSTAPS 522


>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 327

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 182 RRMDSRVRPPTTEQRDRPPASPPTGEDLSVK 274
           RR  +++R  T E    PPA PP+  DL ++
Sbjct: 247 RRKPAKIRE-TKEYTPFPPAQPPSKLDLEIE 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,050,165
Number of Sequences: 5004
Number of extensions: 34692
Number of successful extensions: 150
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)