Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_M13
(639 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ389385-1|CAB52135.1| 378|Drosophila melanogaster Nucleotide e... 32 0.57
AF162793-1|AAD50780.1| 1257|Drosophila melanogaster XPG variant ... 32 0.57
AF162792-1|AAD50779.1| 1236|Drosophila melanogaster XPG protein. 32 0.57
AF144092-1|AAD38375.1| 1236|Drosophila melanogaster nucleotide e... 32 0.57
AF125578-1|AAD47568.1| 1236|Drosophila melanogaster DNA repair e... 32 0.57
AE014134-1515|AAO41169.1| 1236|Drosophila melanogaster CG10890-P... 32 0.57
AE014134-1514|AAF52678.1| 1236|Drosophila melanogaster CG10890-P... 32 0.57
AE014134-1513|AAG22424.1| 1257|Drosophila melanogaster CG10890-P... 32 0.57
AY118529-1|AAM49898.1| 713|Drosophila melanogaster LD24928p pro... 31 1.3
AE014297-4191|AAF56756.1| 713|Drosophila melanogaster CG5003-PA... 31 1.3
AE014296-3689|AAZ66077.2| 244|Drosophila melanogaster CG33772-P... 30 2.3
AE014297-1930|AAF55127.2| 1363|Drosophila melanogaster CG31304-P... 30 3.0
M63711-1|AAA28542.1| 1043|Drosophila melanogaster FTZ-F1 protein. 29 7.0
BT010276-1|AAQ23594.1| 297|Drosophila melanogaster RE08772p pro... 29 7.0
AY118441-1|AAM48470.1| 961|Drosophila melanogaster SD06668p pro... 29 7.0
AE014298-2333|AAN09385.1| 502|Drosophila melanogaster CG9216-PB... 29 7.0
AE014298-2332|AAF48567.2| 1520|Drosophila melanogaster CG9216-PC... 29 7.0
AE014298-2331|AAF48565.1| 1520|Drosophila melanogaster CG9216-PA... 29 7.0
AE014297-3590|AAF56321.3| 961|Drosophila melanogaster CG6695-PA... 29 7.0
AE014296-3055|AAF49231.2| 1027|Drosophila melanogaster CG4059-PB... 29 7.0
AE013599-3841|AAF47183.2| 297|Drosophila melanogaster CG30419-P... 29 7.0
>AJ389385-1|CAB52135.1| 378|Drosophila melanogaster Nucleotide
excision repair protein protein.
Length = 378
Score = 32.3 bits (70), Expect = 0.57
Identities = 14/61 (22%), Positives = 32/61 (52%)
Frame = +2
Query: 137 NLKKEFEARSESETGRRMDSRVRPPTTEQRDRPPASPPTGEDLSVKVLVDRYDRPDRSRR 316
++ K + + +G+ ++ +P + R A+PPT +DL++ + + RP R +R
Sbjct: 253 HVSKRVQLAIDKMSGKIDETPEKPKKVTRTRRAKAAPPTDDDLAIADVATKAARPKRGKR 312
Query: 317 E 319
+
Sbjct: 313 K 313
>AF162793-1|AAD50780.1| 1257|Drosophila melanogaster XPG variant
protein.
Length = 1257
Score = 32.3 bits (70), Expect = 0.57
Identities = 14/61 (22%), Positives = 32/61 (52%)
Frame = +2
Query: 137 NLKKEFEARSESETGRRMDSRVRPPTTEQRDRPPASPPTGEDLSVKVLVDRYDRPDRSRR 316
++ K + + +G+ ++ +P + R A+PPT +DL++ + + RP R +R
Sbjct: 1132 HVSKRVQLAIDKMSGKIDETPEKPKKVTRTRRAKAAPPTDDDLAIADVATKAARPKRGKR 1191
Query: 317 E 319
+
Sbjct: 1192 K 1192
>AF162792-1|AAD50779.1| 1236|Drosophila melanogaster XPG protein.
Length = 1236
Score = 32.3 bits (70), Expect = 0.57
Identities = 14/61 (22%), Positives = 32/61 (52%)
Frame = +2
Query: 137 NLKKEFEARSESETGRRMDSRVRPPTTEQRDRPPASPPTGEDLSVKVLVDRYDRPDRSRR 316
++ K + + +G+ ++ +P + R A+PPT +DL++ + + RP R +R
Sbjct: 1111 HVSKRVQLAIDKMSGKIDETPEKPKKVTRTRRAKAAPPTDDDLAIADVATKAARPKRGKR 1170
Query: 317 E 319
+
Sbjct: 1171 K 1171
>AF144092-1|AAD38375.1| 1236|Drosophila melanogaster nucleotide
excision repair proteinMUS201 protein.
Length = 1236
Score = 32.3 bits (70), Expect = 0.57
Identities = 14/61 (22%), Positives = 32/61 (52%)
Frame = +2
Query: 137 NLKKEFEARSESETGRRMDSRVRPPTTEQRDRPPASPPTGEDLSVKVLVDRYDRPDRSRR 316
++ K + + +G+ ++ +P + R A+PPT +DL++ + + RP R +R
Sbjct: 1111 HVSKRVQLAIDKMSGKIDETPEKPKKVTRTRRAKAAPPTDDDLAIADVATKAARPKRGKR 1170
Query: 317 E 319
+
Sbjct: 1171 K 1171
>AF125578-1|AAD47568.1| 1236|Drosophila melanogaster DNA repair
endonuclease protein.
Length = 1236
Score = 32.3 bits (70), Expect = 0.57
Identities = 14/61 (22%), Positives = 32/61 (52%)
Frame = +2
Query: 137 NLKKEFEARSESETGRRMDSRVRPPTTEQRDRPPASPPTGEDLSVKVLVDRYDRPDRSRR 316
++ K + + +G+ ++ +P + R A+PPT +DL++ + + RP R +R
Sbjct: 1111 HVSKRVQLAIDKMSGKIDETPEKPKKVTRTRRAKAAPPTDDDLAIADVATKAARPKRGKR 1170
Query: 317 E 319
+
Sbjct: 1171 K 1171
>AE014134-1515|AAO41169.1| 1236|Drosophila melanogaster CG10890-PC,
isoform C protein.
Length = 1236
Score = 32.3 bits (70), Expect = 0.57
Identities = 14/61 (22%), Positives = 32/61 (52%)
Frame = +2
Query: 137 NLKKEFEARSESETGRRMDSRVRPPTTEQRDRPPASPPTGEDLSVKVLVDRYDRPDRSRR 316
++ K + + +G+ ++ +P + R A+PPT +DL++ + + RP R +R
Sbjct: 1111 HVSKRVQLAIDKMSGKIDETPEKPKKVTRTRRAKAAPPTDDDLAIADVATKAARPKRGKR 1170
Query: 317 E 319
+
Sbjct: 1171 K 1171
>AE014134-1514|AAF52678.1| 1236|Drosophila melanogaster CG10890-PB,
isoform B protein.
Length = 1236
Score = 32.3 bits (70), Expect = 0.57
Identities = 14/61 (22%), Positives = 32/61 (52%)
Frame = +2
Query: 137 NLKKEFEARSESETGRRMDSRVRPPTTEQRDRPPASPPTGEDLSVKVLVDRYDRPDRSRR 316
++ K + + +G+ ++ +P + R A+PPT +DL++ + + RP R +R
Sbjct: 1111 HVSKRVQLAIDKMSGKIDETPEKPKKVTRTRRAKAAPPTDDDLAIADVATKAARPKRGKR 1170
Query: 317 E 319
+
Sbjct: 1171 K 1171
>AE014134-1513|AAG22424.1| 1257|Drosophila melanogaster CG10890-PA,
isoform A protein.
Length = 1257
Score = 32.3 bits (70), Expect = 0.57
Identities = 14/61 (22%), Positives = 32/61 (52%)
Frame = +2
Query: 137 NLKKEFEARSESETGRRMDSRVRPPTTEQRDRPPASPPTGEDLSVKVLVDRYDRPDRSRR 316
++ K + + +G+ ++ +P + R A+PPT +DL++ + + RP R +R
Sbjct: 1132 HVSKRVQLAIDKMSGKIDETPEKPKKVTRTRRAKAAPPTDDDLAIADVATKAARPKRGKR 1191
Query: 317 E 319
+
Sbjct: 1192 K 1192
>AY118529-1|AAM49898.1| 713|Drosophila melanogaster LD24928p
protein.
Length = 713
Score = 31.1 bits (67), Expect = 1.3
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +2
Query: 128 LVSNLKKEFEARSESETGRRMDSRV---RPPTTEQRDRPPASPPTGE 259
+V+N +EFE E ET D+ V +PP ++PP SPP E
Sbjct: 663 VVANHLEEFERLPELETQEEDDTVVVMLQPPPRADDEQPPKSPPPQE 709
>AE014297-4191|AAF56756.1| 713|Drosophila melanogaster CG5003-PA
protein.
Length = 713
Score = 31.1 bits (67), Expect = 1.3
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +2
Query: 128 LVSNLKKEFEARSESETGRRMDSRV---RPPTTEQRDRPPASPPTGE 259
+V+N +EFE E ET D+ V +PP ++PP SPP E
Sbjct: 663 VVANHLEEFERLPELETQEEDDTVVVMLQPPPRADDEQPPKSPPPQE 709
>AE014296-3689|AAZ66077.2| 244|Drosophila melanogaster CG33772-PA
protein.
Length = 244
Score = 30.3 bits (65), Expect = 2.3
Identities = 20/73 (27%), Positives = 29/73 (39%)
Frame = -1
Query: 345 DSKLDSQFGSRLDRSGRSYRSTNTFTDRSSPVGGDAGGRSLCSVVGGRTLESMRRPVSLS 166
D L + G R+ +SG SYR T+ V G G SL + L P +
Sbjct: 89 DVWLKATIGQRVSKSGESYRDVFTYNVNLCQVMGRGKGISLINFWMNNILRQSNMPRNCP 148
Query: 165 ERASNSFFKLLTS 127
R N + + + S
Sbjct: 149 LREGNYYMRNIRS 161
>AE014297-1930|AAF55127.2| 1363|Drosophila melanogaster CG31304-PA
protein.
Length = 1363
Score = 29.9 bits (64), Expect = 3.0
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 158 ARSESETGRR-MDSRVRPPTTEQRDRPPASPPTGEDL 265
++ E + G+ + R PTTEQ PPA PP +L
Sbjct: 1036 SKKEEQPGQEELQPPPRTPTTEQLSPPPARPPKSAEL 1072
>M63711-1|AAA28542.1| 1043|Drosophila melanogaster FTZ-F1 protein.
Length = 1043
Score = 28.7 bits (61), Expect = 7.0
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -1
Query: 345 DSKLDSQFGSRLDRSGRSYRSTNTFTDRSSPVGGDAGGRSLCSVVGG 205
+S + +FG +D +G +T++ + +S GG GG L GG
Sbjct: 385 ESMSEDEFGLEIDDNGGYQDTTSSHSQQSGGGGGGGGGNLLNGSSGG 431
>BT010276-1|AAQ23594.1| 297|Drosophila melanogaster RE08772p
protein.
Length = 297
Score = 28.7 bits (61), Expect = 7.0
Identities = 20/65 (30%), Positives = 27/65 (41%)
Frame = -1
Query: 258 SPVGGDAGGRSLCSVVGGRTLESMRRPVSLSERASNSFFKLLTSPTAVACA*EASGETRG 79
+P G S C + GR L R + S S+ F +L VA SG+ R
Sbjct: 39 TPAAGSEAPPSGCCGILGRLLCVSRHKATQSVAGSDPFSQLQLQRKGVATPAAVSGQRRR 98
Query: 78 RSPCE 64
R+P E
Sbjct: 99 RTPQE 103
>AY118441-1|AAM48470.1| 961|Drosophila melanogaster SD06668p protein.
Length = 961
Score = 28.7 bits (61), Expect = 7.0
Identities = 29/92 (31%), Positives = 37/92 (40%)
Frame = +2
Query: 38 LRRRRVTCASHGDLPRVSPLASHAHATAVGLVSNLKKEFEARSESETGRRMDSRVRPPTT 217
LRRRR P L S + A +V S L K RS S R +SR R P
Sbjct: 773 LRRRRRELRHKYGTPSSGKL-SDSDAESVASESQLAKSSTRRSRS----RSESRRRSPPP 827
Query: 218 EQRDRPPASPPTGEDLSVKVLVDRYDRPDRSR 313
E + +S T + +Y+R RSR
Sbjct: 828 ETQHSRRSSSRTERRRRTRTPSPKYNRRQRSR 859
>AE014298-2333|AAN09385.1| 502|Drosophila melanogaster CG9216-PB,
isoform B protein.
Length = 502
Score = 28.7 bits (61), Expect = 7.0
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +2
Query: 116 TAVGLVSNLKKEFEARSESETGRRMDSRVRPPTTEQRDRPPASPPTGEDLS 268
T + +V EA++E T R SR E+ +RP A P +D+S
Sbjct: 38 TILPVVKEKDDGLEAKTELLTDLRPSSRADKQKNERCNRPAAEDPQADDIS 88
>AE014298-2332|AAF48567.2| 1520|Drosophila melanogaster CG9216-PC,
isoform C protein.
Length = 1520
Score = 28.7 bits (61), Expect = 7.0
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +2
Query: 116 TAVGLVSNLKKEFEARSESETGRRMDSRVRPPTTEQRDRPPASPPTGEDLS 268
T + +V EA++E T R SR E+ +RP A P +D+S
Sbjct: 1056 TILPVVKEKDDGLEAKTELLTDLRPSSRADKQKNERCNRPAAEDPQADDIS 1106
>AE014298-2331|AAF48565.1| 1520|Drosophila melanogaster CG9216-PA,
isoform A protein.
Length = 1520
Score = 28.7 bits (61), Expect = 7.0
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +2
Query: 116 TAVGLVSNLKKEFEARSESETGRRMDSRVRPPTTEQRDRPPASPPTGEDLS 268
T + +V EA++E T R SR E+ +RP A P +D+S
Sbjct: 1056 TILPVVKEKDDGLEAKTELLTDLRPSSRADKQKNERCNRPAAEDPQADDIS 1106
>AE014297-3590|AAF56321.3| 961|Drosophila melanogaster CG6695-PA,
isoform A protein.
Length = 961
Score = 28.7 bits (61), Expect = 7.0
Identities = 29/92 (31%), Positives = 37/92 (40%)
Frame = +2
Query: 38 LRRRRVTCASHGDLPRVSPLASHAHATAVGLVSNLKKEFEARSESETGRRMDSRVRPPTT 217
LRRRR P L S + A +V S L K RS S R +SR R P
Sbjct: 773 LRRRRRELRHKYGTPSSGKL-SDSDAESVASESQLAKSSTRRSRS----RSESRRRSPPP 827
Query: 218 EQRDRPPASPPTGEDLSVKVLVDRYDRPDRSR 313
E + +S T + +Y+R RSR
Sbjct: 828 ETQHSRRSSSRTERRRRTRTPSPKYNRRQRSR 859
>AE014296-3055|AAF49231.2| 1027|Drosophila melanogaster CG4059-PB,
isoform B protein.
Length = 1027
Score = 28.7 bits (61), Expect = 7.0
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -1
Query: 345 DSKLDSQFGSRLDRSGRSYRSTNTFTDRSSPVGGDAGGRSLCSVVGG 205
+S + +FG +D +G +T++ + +S GG GG L GG
Sbjct: 383 ESMSEDEFGLEIDDNGGYQDTTSSHSQQSGGGGGGGGGNLLNGSSGG 429
>AE013599-3841|AAF47183.2| 297|Drosophila melanogaster CG30419-PA
protein.
Length = 297
Score = 28.7 bits (61), Expect = 7.0
Identities = 20/65 (30%), Positives = 27/65 (41%)
Frame = -1
Query: 258 SPVGGDAGGRSLCSVVGGRTLESMRRPVSLSERASNSFFKLLTSPTAVACA*EASGETRG 79
+P G S C + GR L R + S S+ F +L VA SG+ R
Sbjct: 39 TPAAGSEAPPSGCCGILGRLLCVSRHKATQSVAGSDPFSQLQLQRKGVATPAAVSGQRRR 98
Query: 78 RSPCE 64
R+P E
Sbjct: 99 RTPQE 103
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,533,348
Number of Sequences: 53049
Number of extensions: 470576
Number of successful extensions: 2389
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2382
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2682985500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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