Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_M12
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy...    90   3e-19
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    26   3.8  
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo...    25   6.6  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   6.6  

>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 89.8 bits (213), Expect = 3e-19
 Identities = 43/88 (48%), Positives = 61/88 (69%)
 Frame = +1

Query: 202 LQEQFDQAAANVRNLKSVPSDSDLLELYALFKQATSGDADPANRPGLLDLRGNAKFDAWH 381
           +   F+QAAA+V+ LK  P+  +LL+LYALFKQAT GD +   +PGLLDL+G  K++AW 
Sbjct: 1   MSSTFEQAAADVKELKETPNSDELLKLYALFKQATVGD-NNTEKPGLLDLKGKFKWNAWE 59

Query: 382 KKAGTSKEDAQNAYIAKVEGLVASIGLQ 465
           +  G SKEDA + YI+ V+ L    G++
Sbjct: 60  ELKGKSKEDAASEYISFVDELKTKYGMK 87


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 82  RLFDITYQLFTAYFNQFVKRNRVERSLL 165
           R FD+T+ L +    QF   NRVE+S L
Sbjct: 405 RTFDLTFTLRSGTSYQFSNINRVEQSAL 432


>SPAC22E12.14c |sck2||serine/threonine protein kinase
           Sck2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 646

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 356 PLKSRRPGRLAGSASPDVACLNRAYSSSKSLSLGT 252
           PLK   PGR  G++S D A ++R+ S   S  + T
Sbjct: 136 PLKWESPGRDIGTSSRDSANVSRSSSMMSSHPIPT 170


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 91   DITYQLFTAYFNQFVKRNRVERSLL 165
            +++ QL   YF  F K NRVE  +L
Sbjct: 1791 ELSQQLPKGYFGYFFKTNRVEMEVL 1815


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,409,519
Number of Sequences: 5004
Number of extensions: 47155
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)