Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_M12
(614 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0107 - 20883353-20883627,20883739-20883801,20884608-208847... 75 3e-14
08_01_0417 - 3692247-3692329,3692442-3692504,3693233-3693350,369... 74 8e-14
06_01_0108 - 860080-860162,860276-860338,860857-860974,861481-86... 70 2e-12
04_04_1623 - 34846056-34846223,34846547-34846644,34846738-348468... 51 6e-07
03_02_0592 - 9687700-9687933,9688515-9688591,9688891-9688999,968... 30 1.3
08_02_0318 + 15710834-15711775 29 2.2
09_06_0371 + 22615809-22617431,22618312-22618422,22619361-226194... 28 5.1
05_02_0021 - 5674587-5674799,5674898-5675031,5675129-5675207,567... 24 6.0
11_01_0768 - 6442332-6443792 28 6.8
08_02_1011 - 23544917-23544964,23545334-23545822,23546661-235470... 28 6.8
11_03_0183 - 11310671-11313625,11314243-11314287,11314550-11314717 27 8.9
05_07_0157 - 28079181-28079720 27 8.9
05_06_0020 + 24976990-24977167,24978763-24978874,24979634-249797... 27 8.9
04_04_0189 + 23438794-23439053,23439178-23439400,23439947-23440819 27 8.9
>03_05_0107 -
20883353-20883627,20883739-20883801,20884608-20884725,
20885012-20885023
Length = 155
Score = 75.4 bits (177), Expect = 3e-14
Identities = 39/83 (46%), Positives = 51/83 (61%)
Frame = +1
Query: 196 MSLQEQFDQAAANVRNLKSVPSDSDLLELYALFKQATSGDADPANRPGLLDLRGNAKFDA 375
M LQE F++ A V+ L S+ D L LY L+KQAT GD + +RPG+ R AK+DA
Sbjct: 1 MGLQEDFEEYAEKVKTLPESTSNEDKLILYGLYKQATVGDVN-TSRPGIFAQRDRAKWDA 59
Query: 376 WHKKAGTSKEDAQNAYIAKVEGL 444
W G SKE+A + YI KV+ L
Sbjct: 60 WKAVEGKSKEEAMSDYITKVKQL 82
>08_01_0417 -
3692247-3692329,3692442-3692504,3693233-3693350,
3694084-3694095
Length = 91
Score = 74.1 bits (174), Expect = 8e-14
Identities = 39/84 (46%), Positives = 51/84 (60%)
Frame = +1
Query: 196 MSLQEQFDQAAANVRNLKSVPSDSDLLELYALFKQATSGDADPANRPGLLDLRGNAKFDA 375
M LQE F+Q A + L S+ + L LY L+KQAT GD + A RPG+ R AK+DA
Sbjct: 1 MGLQEDFEQYAEKAKTLPESTSNENKLILYGLYKQATVGDVNTA-RPGIFAQRDRAKWDA 59
Query: 376 WHKKAGTSKEDAQNAYIAKVEGLV 447
W G SKE+A + YI KV+ L+
Sbjct: 60 WKAVEGKSKEEAMSDYITKVKQLL 83
>06_01_0108 -
860080-860162,860276-860338,860857-860974,861481-861492
Length = 91
Score = 69.7 bits (163), Expect = 2e-12
Identities = 36/84 (42%), Positives = 49/84 (58%)
Frame = +1
Query: 196 MSLQEQFDQAAANVRNLKSVPSDSDLLELYALFKQATSGDADPANRPGLLDLRGNAKFDA 375
M LQE+F++ A + L S+ D L LY L+KQAT G RPG+ +L+ K+DA
Sbjct: 1 MGLQEEFEEFAEKAKTLPDTISNEDKLLLYGLYKQATVGPVT-TGRPGIFNLKDRYKWDA 59
Query: 376 WHKKAGTSKEDAQNAYIAKVEGLV 447
W G SKE+A YI KV+ L+
Sbjct: 60 WKAVEGKSKEEAMADYITKVKQLL 83
>04_04_1623 -
34846056-34846223,34846547-34846644,34846738-34846829,
34847096-34847202,34847385-34847490,34848108-34848547
Length = 336
Score = 51.2 bits (117), Expect = 6e-07
Identities = 33/85 (38%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Frame = +1
Query: 202 LQEQFDQA----AANVRNLKSVPSDSDLLELYALFKQATSGDADPANRPGLLDLRGNAKF 369
L E F A AA+ + SVP + L +LY L+K AT G A +P L L+ AK+
Sbjct: 90 LDEDFSAASAFVAASAASGTSVPEQAQL-QLYGLYKIATEGPC-TAPQPSALKLKARAKW 147
Query: 370 DAWHKKAGTSKEDAQNAYIAKVEGL 444
+AWHK E+A YI V+ L
Sbjct: 148 NAWHKLGAMPTEEAMQKYITVVDEL 172
>03_02_0592 -
9687700-9687933,9688515-9688591,9688891-9688999,
9689162-9689260,9689368-9689454,9689570-9689630,
9689739-9689813,9689936-9689961
Length = 255
Score = 30.3 bits (65), Expect = 1.3
Identities = 23/69 (33%), Positives = 34/69 (49%)
Frame = +1
Query: 55 AKDNSS*PLRLFDITYQLFTAYFNQFVKRNRVERSLLYLNLPIS*VIMSLQEQFDQAAAN 234
A ++S P RLFD T +L+ YF F +R + R+ L I V + LQ++
Sbjct: 18 ALGSASEPPRLFDGTTRLYICYFCPFAQRAWIIRNFKGLQDKIELVGIDLQDKPAWYKEK 77
Query: 235 VRNLKSVPS 261
V +VPS
Sbjct: 78 VYEQGTVPS 86
>08_02_0318 + 15710834-15711775
Length = 313
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -1
Query: 395 VPAFLCHASNLALPLK-SRRPGRLAGSASPDVACLNRAYSSSKSLSLGTDFRFLTLAA 225
+P H + L LP + PG+LA +A D C AY+++ ++L + L L+A
Sbjct: 153 LPFLSAHVAVLVLPAAVAPYPGQLAHAADVDARCAYPAYAAALLVALAALYAPLLLSA 210
>09_06_0371 + 22615809-22617431,22618312-22618422,22619361-22619453,
22619562-22619661,22619754-22619834,22620774-22621047,
22621254-22622069,22622921-22623029,22623509-22623602,
22623881-22623939,22624150-22624197
Length = 1135
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +1
Query: 202 LQEQFDQAAANVRNLKSVPSDSDLLELYALFKQATSGDADPANRPGLLDLRGNAKFD 372
L + D A +R+L S+ DLL+ L K+ T+G+ + GL++ K++
Sbjct: 1041 LNYRIDMPDAEIRDLVSMKRWDDLLKSDQLTKELTNGNTFAGWKEGLINFPPTYKYE 1097
>05_02_0021 -
5674587-5674799,5674898-5675031,5675129-5675207,
5675737-5675799,5676420-5676482,5676557-5676673,
5676756-5676803,5676918-5677103,5677948-5678047,
5678323-5678562,5678583-5678686
Length = 448
Score = 24.2 bits (50), Expect(2) = 6.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 193 IMSLQEQFDQAAANVRNLKSVPSDSD 270
++ L+E + A V LKS+ +DSD
Sbjct: 76 VLDLEEGWRDVLAGVAKLKSIHTDSD 101
Score = 22.2 bits (45), Expect(2) = 6.0
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +1
Query: 277 ELYALFKQATSGDADPANRPGLLDLRGN 360
ELY L KQA D P L + GN
Sbjct: 132 ELYHLCKQALDDHLDSIVLPSLNEKHGN 159
>11_01_0768 - 6442332-6443792
Length = 486
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +1
Query: 223 AAANVRNLKSVPSDSDLLELYALFKQATSGDADPANRPGL 342
+ A V +K VP D LL ++A F Q G A +RP L
Sbjct: 148 SGAGVNTVK-VPEDEWLLAIHASFSQLLRGPAGGVSRPPL 186
>08_02_1011 -
23544917-23544964,23545334-23545822,23546661-23547054,
23548707-23549104
Length = 442
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/44 (27%), Positives = 19/44 (43%)
Frame = -1
Query: 197 MMTQEMGKFRYRSERSTRFLFTNWLK*AVNSWYVISNKRSGYDE 66
M+ +E F+ R E+ +F + W + WY N DE
Sbjct: 391 MLAEEQADFQKRQEQELKFTASGWKRDGHGRWYRDENVEFDSDE 434
>11_03_0183 - 11310671-11313625,11314243-11314287,11314550-11314717
Length = 1055
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +1
Query: 250 SVPSDSDLLELYALFKQATSGDADPANRPGLLDLRGNAKFDAWHKKAGTSK 402
+VPS SDL+++++ + A+ AN + + DA AG K
Sbjct: 972 AVPSRSDLIKIFSQYGPVNEAKAETANNANCAQVIFKRRMDAEAAFAGAGK 1022
>05_07_0157 - 28079181-28079720
Length = 179
Score = 27.5 bits (58), Expect = 8.9
Identities = 23/63 (36%), Positives = 27/63 (42%)
Frame = -1
Query: 410 ASSFEVPAFLCHASNLALPLKSRRPGRLAGSASPDVACLNRAYSSSKSLSLGTDFRFLTL 231
A S +P F ++ A P R R G VAC + A SS K L LG LTL
Sbjct: 7 AVSSTLPLFHVRTASSA-PAALRFTTRGRGGGRHSVACNSTAASSPKVLELGDAIAGLTL 65
Query: 230 AAA 222
A
Sbjct: 66 EEA 68
>05_06_0020 +
24976990-24977167,24978763-24978874,24979634-24979722,
24979801-24979869,24979953-24980082,24980506-24980664,
24980767-24981127,24981343-24981452,24981753-24981909,
24983336-24983748,24983828-24984020,24984384-24986198
Length = 1261
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +1
Query: 208 EQFDQAAANVRNLKSVPSDSDL-LELYALFKQATSGDADPANRPGLLDLRGNAK 366
+Q ++ V NL+ SD L+ + + SGD P GL D+ GNA+
Sbjct: 497 KQAEEVTTKVENLEEGASDRQGDLDSSEIAHRPDSGDKYPRQMNGLSDVTGNAQ 550
>04_04_0189 + 23438794-23439053,23439178-23439400,23439947-23440819
Length = 451
Score = 27.5 bits (58), Expect = 8.9
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Frame = +1
Query: 214 FDQAAAN---VRNLKSVPSDSDLLELYALFKQATSGDADPANRPGLLDLRGNAKFDAWHK 384
FD A+A+ V L+ + D+ + A ++ DAD A LDL A D WHK
Sbjct: 80 FDLASASPELVVGLRELYGVRDVFGVAAGYRGFYGPDADHAR----LDL---AAVDDWHK 132
Query: 385 KAGTSKEDAQNAYIAK--VEGLVA 450
K GT + + + V+G+VA
Sbjct: 133 KGGTVLKTTRGGFDLNKIVDGIVA 156
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,092,263
Number of Sequences: 37544
Number of extensions: 297905
Number of successful extensions: 674
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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