Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_M10
         (389 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    26   1.8  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   2.4  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   3.1  
SPCC61.02 |spt3||histone acetyltransferase complex subunit Spt3|...    25   3.1  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    24   7.2  
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    24   7.2  

>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 121 VFGDRFSNLRVVATKALPPRYGFLKMFSFIGSSG 20
           + G   +  R + T+   P+YG +   SFIG +G
Sbjct: 331 ILGAEKALFRALKTRGNTPKYGIIYHSSFIGKAG 364


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 213 LMLSDDVVQDGKHTKARGTGSQVVMPEHTYWYLATGF 103
           + +SDD      +T+     S VV  +H YW+L++GF
Sbjct: 466 ISMSDDGRIYFMNTRDIKVRSLVVKLKHKYWHLSSGF 502


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 84  LPRRYHHAMVSSRCFPSSE 28
           LP+  HH  V   C P+SE
Sbjct: 648 LPKSCHHPQVKHNCHPTSE 666


>SPCC61.02 |spt3||histone acetyltransferase complex subunit
           Spt3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 307

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 292 WMELRQVTGVYLKDRQYRLSALTTILTDVK 203
           W E RQ +  Y K +++R     +ILTD +
Sbjct: 176 WSECRQASFTYRKGKRFREWCGMSILTDTR 205


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 85  LPPSSLKTCRQIP 123
           +PP+ L TCRQ+P
Sbjct: 470 IPPTLLCTCRQVP 482


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 84  LPRRYHHAMVSSRCFPSSEAQADF 13
           LP R HH+ VS RC    +    F
Sbjct: 122 LPDRSHHSRVSMRCIRKFDHYCSF 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,621,185
Number of Sequences: 5004
Number of extensions: 31084
Number of successful extensions: 59
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)