Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_M10
         (389 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y12661-1|CAA73210.1|  616|Homo sapiens neuro-endocrine specific ...    30   3.1  
BC063835-1|AAH63835.1|  615|Homo sapiens VGF nerve growth factor...    30   3.1  
AC004876-3|AAD45830.1|  615|Homo sapiens WUGSC:H_DJ0747G18.3 pro...    30   3.1  
AY744141-1|AAW62445.1|  352|Homo sapiens mutant CCR5 chemokine r...    29   5.3  

>Y12661-1|CAA73210.1|  616|Homo sapiens neuro-endocrine specific
           protein VGF protein.
          Length = 616

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -3

Query: 78  RRYHHAMVSSRCFPSSEAQA 19
           R YHHA+  SR +P  EAQA
Sbjct: 564 RHYHHALPPSRHYPGREAQA 583


>BC063835-1|AAH63835.1|  615|Homo sapiens VGF nerve growth factor
           inducible protein.
          Length = 615

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -3

Query: 78  RRYHHAMVSSRCFPSSEAQA 19
           R YHHA+  SR +P  EAQA
Sbjct: 564 RHYHHALPPSRHYPGREAQA 583


>AC004876-3|AAD45830.1|  615|Homo sapiens WUGSC:H_DJ0747G18.3
           protein.
          Length = 615

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -3

Query: 78  RRYHHAMVSSRCFPSSEAQA 19
           R YHHA+  SR +P  EAQA
Sbjct: 564 RHYHHALPPSRHYPGREAQA 583


>AY744141-1|AAW62445.1|  352|Homo sapiens mutant CCR5 chemokine
           receptor protein.
          Length = 352

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 100 NLRVVATKALPPRYGFLKMFSFIGS 26
           N+R +A + LPP Y  + +F F+G+
Sbjct: 24  NVRQIAARLLPPLYSLVFIFGFVGN 48


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,509,009
Number of Sequences: 237096
Number of extensions: 1190361
Number of successful extensions: 1456
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1456
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2698607930
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)