Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_M10
         (389 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71181-4|CAA94897.1|  486|Caenorhabditis elegans Hypothetical pr...    33   0.054
Z70686-5|CAA94613.1|  135|Caenorhabditis elegans Hypothetical pr...    29   1.5  
U10402-6|AAV34793.1|  360|Caenorhabditis elegans Tryptophanyl (w...    26   8.2  
AB096634-1|BAC76734.1|  360|Caenorhabditis elegans tryptophanyl-...    26   8.2  

>Z71181-4|CAA94897.1|  486|Caenorhabditis elegans Hypothetical
           protein K07C5.4 protein.
          Length = 486

 Score = 33.5 bits (73), Expect = 0.054
 Identities = 28/93 (30%), Positives = 43/93 (46%)
 Frame = -2

Query: 298 SGWMELRQVTGVYLKDRQYRLSALTTILTDVK*RCGPRW*TH*G*RHWFSSGDARTHLLV 119
           S  ME RQ    Y+KDR    +   + L  +  + G R  +H G     +   A T + +
Sbjct: 278 SSLMEYRQQLHEYIKDRMDHCAPSLSAL--IGEQVGARLISHAGSLTNLAKYPAST-VQI 334

Query: 118 FGDRFSNLRVVATKALPPRYGFLKMFSFIGSSG 20
            G   +  R + T++  P+YG L   SFIG +G
Sbjct: 335 LGAEKALFRALKTRSNTPKYGLLFHSSFIGKAG 367


>Z70686-5|CAA94613.1|  135|Caenorhabditis elegans Hypothetical
           protein R10H10.6 protein.
          Length = 135

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -1

Query: 176 TLRLEALVLKW*CQNTPIGIWRQVFKLEGGSYQGATTTLWFPQ 48
           T  ++  V+    +  P+G++    KL+G SY+ A +  W PQ
Sbjct: 27  TANMDGTVVNGLPEGLPVGVYFGTAKLDGKSYKMAMSIGWNPQ 69


>U10402-6|AAV34793.1|  360|Caenorhabditis elegans Tryptophanyl (w)
           trna synthetaseprotein 2, isoform b protein.
          Length = 360

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 148 SGDARTHLLVFGDRFSNLRVVATKALPPRY 59
           SG   +HLL +G + +NLR+++T   P  Y
Sbjct: 4   SGKFTSHLLNYGFKPNNLRLLSTSTHPTIY 33


>AB096634-1|BAC76734.1|  360|Caenorhabditis elegans
           tryptophanyl-tRNA synthetase (mitochondrial)protein.
          Length = 360

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 148 SGDARTHLLVFGDRFSNLRVVATKALPPRY 59
           SG   +HLL +G + +NLR+++T   P  Y
Sbjct: 4   SGKFTSHLLNYGFKPNNLRLLSTSTHPTIY 33


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,843,445
Number of Sequences: 27780
Number of extensions: 171917
Number of successful extensions: 224
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)