Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_M09
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    26   3.5  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    26   3.5  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    26   4.6  
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    25   8.1  
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    25   8.1  

>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +2

Query: 5    EEFLNKKSLYNCVNESFIFLV 67
            E F N KSLYN    SFI L+
Sbjct: 1634 EAFSNSKSLYNVEEASFILLL 1654


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 227 GTYPSRKAGYYCTLKLFSYKNILFV 153
           GT PS  A Y    KL+SY+N   V
Sbjct: 135 GTGPSLNASYKSLCKLYSYENSFIV 159


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 7/21 (33%), Positives = 16/21 (76%)
 Frame = -1

Query: 465 NANVKFRAQMPRITRKSAYKH 403
           N  ++F+ Q+P ++R++ Y+H
Sbjct: 141 NLLIQFQIQVPNVSRRTVYRH 161


>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
 Frame = -3

Query: 316 NDLYFFVLNFD---YVLIVNLDI 257
           ND++FF  NFD   YV +  LDI
Sbjct: 319 NDIHFFYCNFDDPIYVKLEKLDI 341


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 324 ITLILRTLYAIHTLIFYGKIHLLSL 398
           + L+L TL+ I+T  FY  + L  L
Sbjct: 296 LVLVLLTLFCIYTAAFYRSVRLARL 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,248,249
Number of Sequences: 5004
Number of extensions: 44548
Number of successful extensions: 97
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)