Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_M09
         (582 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0352 + 3102552-3105243,3105684-3105748,3105824-3106492           28   6.2  
06_03_0086 + 16458881-16458952,16461795-16461966,16462621-164628...    27   8.2  

>08_01_0352 + 3102552-3105243,3105684-3105748,3105824-3106492
          Length = 1141

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 549 RLKSIYLFTKRCTVIPRLARPRYARF 472
           RL+S+Y F   C+  P +  PR AR+
Sbjct: 554 RLRSLYHFDVTCSSFPSVGTPRSARY 579


>06_03_0086 +
           16458881-16458952,16461795-16461966,16462621-16462889,
           16463045-16463316,16463409-16463533,16463852-16463964,
           16464579-16464692
          Length = 378

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -3

Query: 280 VLIVNLDIREFQLTRFFSERIPRVKRGITV 191
           V+++N+ + E     F  ERI ++K+G+T+
Sbjct: 250 VVVINMPLTEKTRGMFNKERIAKMKKGVTI 279


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,941,443
Number of Sequences: 37544
Number of extensions: 207324
Number of successful extensions: 311
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)