Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_M09
         (582 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81043-1|CAB02799.1|  755|Caenorhabditis elegans Hypothetical pr...    28   4.2  
AF000263-3|AAL77185.1|  697|Caenorhabditis elegans Hypothetical ...    28   4.2  
AF000263-2|AAK21464.1|  755|Caenorhabditis elegans Hypothetical ...    28   4.2  
AF000263-1|AAK21462.1|  781|Caenorhabditis elegans Hypothetical ...    28   4.2  
Z22181-4|CAA80182.1|  824|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription...    27   9.7  

>Z81043-1|CAB02799.1|  755|Caenorhabditis elegans Hypothetical
           protein C29F3.1 protein.
          Length = 755

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -1

Query: 471 HYNANVKFRAQMPRITRKSAYKHNVKTIDVFFRKK*EYVSHKVFLEL 331
           H N  +K R ++ ++ R+  Y H V TID    K  + V   VF +L
Sbjct: 398 HLNRQLK-RQKISKLEREKIYNHLVPTIDYSAMKNADVVIEAVFEDL 443


>AF000263-3|AAL77185.1|  697|Caenorhabditis elegans Hypothetical
           protein T08B2.7c protein.
          Length = 697

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = -1

Query: 471 HYNANVKFRAQMPRITRKSAYKHNVKTIDVFFRKK*EYVSHKVFLELK*LIKMI 310
           H N  VK R ++ ++ ++  Y H V TID    K  + V   VF +L+   K+I
Sbjct: 424 HLNKQVK-RRKINKLEKERIYNHLVPTIDYSAMKNADVVIEAVFEDLQLKHKVI 476


>AF000263-2|AAK21464.1|  755|Caenorhabditis elegans Hypothetical
           protein T08B2.7b protein.
          Length = 755

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = -1

Query: 471 HYNANVKFRAQMPRITRKSAYKHNVKTIDVFFRKK*EYVSHKVFLELK*LIKMI 310
           H N  VK R ++ ++ ++  Y H V TID    K  + V   VF +L+   K+I
Sbjct: 398 HLNKQVK-RRKINKLEKERIYNHLVPTIDYSAMKNADVVIEAVFEDLQLKHKVI 450


>AF000263-1|AAK21462.1|  781|Caenorhabditis elegans Hypothetical
           protein T08B2.7a protein.
          Length = 781

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = -1

Query: 471 HYNANVKFRAQMPRITRKSAYKHNVKTIDVFFRKK*EYVSHKVFLELK*LIKMI 310
           H N  VK R ++ ++ ++  Y H V TID    K  + V   VF +L+   K+I
Sbjct: 424 HLNKQVK-RRKINKLEKERIYNHLVPTIDYSAMKNADVVIEAVFEDLQLKHKVI 476


>Z22181-4|CAA80182.1|  824|Caenorhabditis elegans Hypothetical
           protein ZK632.5 protein.
          Length = 824

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -1

Query: 531 LFTKRCTVIPRLARPRYARFHYNANV-KFRAQMPRITRKSAYKHNVKTIDVFFRKK*EYV 355
           L T+    + R  R RYA FH N  +   R  M  +  +S Y+  +KT+D F  K  +  
Sbjct: 652 LETRNSETLTREPRLRYAFFHMNTTIFAIRKNMLTLIEQS-YEAFMKTLD-FKSKPDQRS 709

Query: 354 SHKV 343
           SH++
Sbjct: 710 SHEL 713


>Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical
           protein F52B5.5a protein.
          Length = 644

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/47 (21%), Positives = 26/47 (55%)
 Frame = -1

Query: 534 YLFTKRCTVIPRLARPRYARFHYNANVKFRAQMPRITRKSAYKHNVK 394
           YL+TK   ++P   + +  + H+N+N+  R +  +  +K   ++ ++
Sbjct: 252 YLWTKMGCLVPIQVKWKLDKRHFNSNLSLRIRFVKYDKKENVEYAIR 298


>AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription
           factor CEP-1 protein.
          Length = 644

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/47 (21%), Positives = 26/47 (55%)
 Frame = -1

Query: 534 YLFTKRCTVIPRLARPRYARFHYNANVKFRAQMPRITRKSAYKHNVK 394
           YL+TK   ++P   + +  + H+N+N+  R +  +  +K   ++ ++
Sbjct: 252 YLWTKMGCLVPIQVKWKLDKRHFNSNLSLRIRFVKYDKKENVEYAIR 298


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,052,489
Number of Sequences: 27780
Number of extensions: 238874
Number of successful extensions: 608
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)