Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_M08
         (505 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    26   3.7  
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    25   4.9  
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom...    25   4.9  
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    25   6.5  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   8.5  

>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -1

Query: 409 GTSNSGCFIAFLPGNHGKLHRLSVAYRTHSLARVVS 302
           GT N GC +   P     L RLS+     S+A  ++
Sbjct: 832 GTQNVGCLLRIEPNYEQNLIRLSIRSTNTSIANTLA 867


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 401 TGPGGESVKGSPYAAD 448
           TG GGES+ G P+A +
Sbjct: 71  TGMGGESIYGEPFAVE 86


>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 224 NVKSGYGFINRNDTKEDVFVHQTAIIRNNPRK 319
           N K  Y + + ++  E +F   T I+ NNP+K
Sbjct: 254 NDKENYNYPDFSNDNELLFSLATLIVENNPKK 285


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 325 HSLARVVSDYRSLMYKHIFFGVIPIDETISTLDVE 221
           H LA VV D + +    I  G + + + IS +D+E
Sbjct: 231 HDLAAVVDDDKDIAQSIINAGKVSMGQDISEIDLE 265


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 19/71 (26%), Positives = 32/71 (45%)
 Frame = +2

Query: 248 INRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGYEAARVTGPGGESVK 427
           +N  D    + +    +I+N+    +R +GD     F ++    GY  AR+T    E + 
Sbjct: 646 LNTLDVSPQLPIVMAYVIKNDDGGCIRYIGDVVDAIFGILDAYHGY--ARLT----EGLL 699

Query: 428 GSPYAADKRRS 460
           G  YA  K+ S
Sbjct: 700 GILYAIIKQES 710


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,826,335
Number of Sequences: 5004
Number of extensions: 29241
Number of successful extensions: 66
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)