Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_M06
(577 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 226 1e-59
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 211 3e-55
07_01_0467 - 3524598-3524837,3524939-3525466,3526242-3526892,352... 30 1.5
05_01_0573 - 5083030-5083151,5084639-5084738,5084790-5084829,508... 29 2.0
04_03_0182 - 12349072-12349149,12349459-12349656,12349746-123497... 29 2.0
11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861 29 2.7
03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130... 29 2.7
02_04_0064 - 19375497-19375580,19375659-19375733,19376359-193765... 29 3.5
06_01_0913 - 7042230-7043332,7043420-7043621 28 6.1
05_07_0165 + 28107093-28108457 28 6.1
01_02_0122 + 11348686-11348948,11350492-11350587,11351513-113515... 28 6.1
09_03_0103 - 12383585-12384700 27 8.1
04_04_1217 + 31820734-31820841,31820929-31821078,31821183-318212... 27 8.1
01_01_1134 + 8994315-8995892 27 8.1
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 226 bits (552), Expect = 1e-59
Identities = 115/190 (60%), Positives = 138/190 (72%), Gaps = 9/190 (4%)
Frame = +3
Query: 33 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALR 209
MGISRD HKRRATGGK+ RKKRKYELGR ANTKL + + VR RGGN K+RALR
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALR 60
Query: 210 LDTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLL 389
LDTGN++WGSE TRKTRI+DVVYNASNNELVRT+TLVK+AIV VDA PF+QWY +HY +
Sbjct: 61 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120
Query: 390 PLGRKK--------GAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGGLEEQFHTGRL 545
+GRKK A+ E E A K+S +K RQ+ ++ +EEQF +GRL
Sbjct: 121 DIGRKKKAPAAKKDAAEGQEGEAATEEAKKSNHVVRKLEKRQQTRTLDSHIEEQFGSGRL 180
Query: 546 LACVASRPGQ 575
LAC++SRPGQ
Sbjct: 181 LACISSRPGQ 190
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 211 bits (515), Expect = 3e-55
Identities = 115/207 (55%), Positives = 138/207 (66%), Gaps = 26/207 (12%)
Frame = +3
Query: 33 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALR 209
MGISRD HKRRATGGK+ RKKRKYELGR ANTKL + + VR RGGN K+RALR
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60
Query: 210 LDTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLL 389
LDTGN++WGSE TRKTRI+DVVYNASNNELVRT+TLVK+AIV VDA PF+QWY +HY +
Sbjct: 61 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120
Query: 390 PLGRKKGA-------------------------KLTEAEEAIINKKRSQKTAKKYLSRQR 494
+GRKK A K +AE K+S +K RQ+
Sbjct: 121 DIGRKKKAPAAKKDAEHALGKIRCLFIGLYVMLKGQDAEATTEEAKKSNHVVRKLEKRQQ 180
Query: 495 LSKVEGGLEEQFHTGRLLACVASRPGQ 575
++ +EEQF +GRLLAC++SRPGQ
Sbjct: 181 GRTLDAHIEEQFGSGRLLACISSRPGQ 207
>07_01_0467 -
3524598-3524837,3524939-3525466,3526242-3526892,
3527015-3527500,3527580-3527792,3527885-3528174,
3528276-3528418,3528633-3528855,3528983-3529160,
3529598-3529867
Length = 1073
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Frame = +3
Query: 105 RKYELGRPAANTKLGPQRIHLVRSR----GGNTKYRALRLDTGN-FAWGS 239
R+ +LG P+ +T+ P+R+ +++R K+ A DTG F WGS
Sbjct: 271 REGQLGYPSVDTQPTPRRVSSLKARIISVAAANKHSAAVADTGEVFTWGS 320
>05_01_0573 -
5083030-5083151,5084639-5084738,5084790-5084829,
5085122-5085567
Length = 235
Score = 29.5 bits (63), Expect = 2.0
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 503 GRGWSGGAIPHWTAVS 550
G GW GG+ HW++VS
Sbjct: 65 GNGWQGGSTDHWSSVS 80
>04_03_0182 -
12349072-12349149,12349459-12349656,12349746-12349750,
12349928-12350041,12350129-12350240,12350363-12350377
Length = 173
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -1
Query: 256 LRVEHSDPHAKFPVSRRRARYLVLPPRDLTKWMRWGPSLV 137
LRV H H + +R R + + P ++ K RWG ++
Sbjct: 16 LRVMHFSGHGDWTTNRDRPTFTLYPLQECYKLWRWGTQMI 55
>11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861
Length = 158
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +3
Query: 60 KRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTK 194
KRR GG+RA R+K + E GR A + R RGG +
Sbjct: 45 KRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 89
Score = 29.1 bits (62), Expect = 2.7
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 60 KRRATGGKRAPIRKKRKYELGRPAANTKLGPQRI-HLVRSRGGNTKYRALR 209
KRR GG+RA R+K + E GR A + + R RGG + R R
Sbjct: 81 KRRRGGGRRAAGRRKEEEEAGRRKAGEETRRRGAGRRKRRRGGRRRRRRRR 131
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +3
Query: 60 KRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTK 194
+RR GG+RA R+K + E GR A + R RGG +
Sbjct: 9 RRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 53
>03_01_0161 +
1307206-1307769,1307979-1308101,1308182-1308286,
1308688-1308867,1308988-1309050,1309151-1309345,
1309704-1309805,1309885-1309947,1310045-1310113,
1310215-1310270,1310587-1310755
Length = 562
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = +3
Query: 159 IHLVRSRGGNTKYRALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 338
+H + + GG T R +R C +++ ++V++ + NELV T +N I+
Sbjct: 376 LHGLLASGGGTADRCIRFWNTTTNMHLNCVDTGSQVCNLVWSKNVNELVSTHGYSQNQII 435
Query: 339 V 341
V
Sbjct: 436 V 436
>02_04_0064 -
19375497-19375580,19375659-19375733,19376359-19376514,
19377016-19377093,19377328-19377428,19377570-19377717,
19378172-19378316,19378803-19378906,19380257-19380385,
19380526-19380636,19380734-19380863,19381915-19382034,
19382360-19382481,19382965-19383048,19383241-19383357,
19383442-19383522,19384138-19384197,19384398-19384440,
19384528-19384626,19385353-19385564,19385964-19386091,
19386246-19386396
Length = 825
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 135 WQPGDLTHTSSSYEWAHVCRP*PSSYANDHD 43
W+ GD+ HT ++ W+ C +YA HD
Sbjct: 570 WKMGDIVHTLTNRRWSEKC----VTYAESHD 596
>06_01_0913 - 7042230-7043332,7043420-7043621
Length = 434
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 220 PVSRRRARYLVLPPRDLTKWMRWGPSLVLAAGRPNSY 110
P +R+ R+ P +T + W P L +AAGRP ++
Sbjct: 180 PGTRKFWRW-AFPTHGVTVSVYWAPFLAMAAGRPENF 215
>05_07_0165 + 28107093-28108457
Length = 454
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 534 CGIAPPDHPLPWTGAACS 481
C +PPD+ LPW AA S
Sbjct: 248 CTYSPPDYGLPWADAAVS 265
>01_02_0122 +
11348686-11348948,11350492-11350587,11351513-11351524,
11354009-11354699
Length = 353
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 443 KQKTQSKDSEEVPEQAAPVQGRGWSGGAIPHWTAVS 550
K +T+ KD PE A G G GG I + +A S
Sbjct: 192 KTRTKEKDKAPAPEAAHNDDGGGGGGGGIDNVSAAS 227
>09_03_0103 - 12383585-12384700
Length = 371
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = -3
Query: 443 YDGFLSLSELGTFLPSEWQQVVAFIPLPERCGIHHDNSILYQGFGTHQFIVRGIINNIN 267
+D F E+ T W+Q+ +F P G+H + ++ Y ++I IN +N
Sbjct: 173 FDSFNVCCEIFTIGDKSWRQIGSFHGAPTDRGVHVNGAVYY--LTKFRYIASSRINCLN 229
>04_04_1217 +
31820734-31820841,31820929-31821078,31821183-31821281,
31821398-31821490,31821585-31821851
Length = 238
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 65 PLMPMITTDTHLGWVRKEKPR 3
P++PM+ T THL W RK R
Sbjct: 162 PIVPMVVTGTHLAW-RKNSLR 181
>01_01_1134 + 8994315-8995892
Length = 525
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 219 GNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 362
G F+ C+ RK +DV + RT +N+ VV D+T F+
Sbjct: 146 GLFSRDCPCAGRKAVTVDVASEPRSPATPRTHARFENSHVVADSTIFK 193
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,150,529
Number of Sequences: 37544
Number of extensions: 453908
Number of successful extensions: 1352
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1349
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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