Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_M04
         (451 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...    92   4e-20
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...    91   7e-20
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    87   2e-18
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    29   0.44 
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces...    29   0.44 
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy...    29   0.44 
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   2.3  
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S...    25   4.1  
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    25   7.1  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    24   9.4  

>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 91.9 bits (218), Expect = 4e-20
 Identities = 46/102 (45%), Positives = 60/102 (58%)
 Frame = +1

Query: 145 SKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERD 324
           SK+    PES+                   ++++A  KKR+ I KRAE Y  EYR  ER+
Sbjct: 10  SKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKAERE 69

Query: 325 EIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVL 450
           +I L R+AR  GNYYVP E KL FVIRIRG+N + PK RK++
Sbjct: 70  QIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIM 111


>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 91.1 bits (216), Expect = 7e-20
 Identities = 44/95 (46%), Positives = 58/95 (61%)
 Frame = +1

Query: 166 PESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQ 345
           PES+                   +++SA  KKR+ I KRAE Y  EYR  ER++I LAR+
Sbjct: 16  PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARK 75

Query: 346 ARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVL 450
           AR  GNY+VP E KL FV+RIRG+N + PK RK++
Sbjct: 76  ARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIM 110


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 86.6 bits (205), Expect = 2e-18
 Identities = 39/73 (53%), Positives = 52/73 (71%)
 Frame = +1

Query: 232 LKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIR 411
           + ++ A  K RKE FKRAE ++  YR +ER+ IRL R A+N+G+ +VP E KL FVIRI 
Sbjct: 37  IAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIA 96

Query: 412 GVNQVSPKVRKVL 450
           GV  + PK+RKVL
Sbjct: 97  GVKNMPPKIRKVL 109


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 28.7 bits (61), Expect = 0.44
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +1

Query: 34  PGLQNSDEAAWSFIPQHDGCDYRKEAARKKPVKGKEDSKKLPAVPE 171
           P +QNS     S +P H   DY + AA   PV  ++ S+K    P+
Sbjct: 463 PSIQNSLSVHESEMPPHVTRDYTQPAASATPVPKEKPSEKSEKPPK 508


>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 224

 Score = 28.7 bits (61), Expect = 0.44
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = +1

Query: 250 SIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGN 363
           S+K+ +EI ++ E+    +R+K ++  ++ + A N GN
Sbjct: 152 SLKRNREIIEKEERSSFHFRVKPKNLDKVPKLAENEGN 189


>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 327

 Score = 28.7 bits (61), Expect = 0.44
 Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 1/107 (0%)
 Frame = +1

Query: 16  RRLTMDPGLQNSDEAAWS-FIPQHDGCDYRKEAARKKPVKGKEDSKKLPAVPESVXXXXX 192
           R L  DP L N    +W  F+PQ      ++  AR+KP K +E  +  P  P        
Sbjct: 220 RELAKDPTLANE---SWDRFLPQFK----KRNVARRKPAKIRETKEYTPFPP----AQPP 268

Query: 193 XXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIR 333
                     +  LK+     KKR E   + EQ  ++ + KE++ ++
Sbjct: 269 SKLDLEIESGEYFLKKEEKERKKRAE---KKEQQKEKKKEKEKERMK 312


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +1

Query: 280 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE 381
           +A Q   ++ +     +RL     N+ N+++PGE
Sbjct: 309 KATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342


>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 241 RSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARN 354
           R  S K ++E  +R +QYV E    E+D+I + +  ++
Sbjct: 67  RGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKD 104


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +1

Query: 235 KRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGN 363
           KR  A  ++ K+  +R ++ + E   KE++ IRL  + +++ N
Sbjct: 121 KRIEAERQRLKDEEERRKKELMEKEKKEKERIRLIEEQKHKEN 163


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 249 SGTPLECDLKTASSECLPPFTVLQ 178
           S  PLE DL+   +ECL P  ++Q
Sbjct: 187 SSDPLE-DLRLTLTECLNPINIVQ 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.134    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,900,364
Number of Sequences: 5004
Number of extensions: 35619
Number of successful extensions: 105
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)