Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_M04
(451 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003139-2|AAB54165.1| 244|Caenorhabditis elegans Ribosomal pro... 93 1e-19
AF016672-5|AAB66120.1| 951|Caenorhabditis elegans Hypothetical ... 28 3.6
AC006631-2|AAL02500.1| 142|Caenorhabditis elegans Hypothetical ... 28 3.6
Z82095-7|CAN86628.1| 390|Caenorhabditis elegans Hypothetical pr... 27 6.3
Z82095-6|CAI79281.2| 412|Caenorhabditis elegans Hypothetical pr... 27 6.3
Z82095-5|CAB05026.2| 414|Caenorhabditis elegans Hypothetical pr... 27 6.3
Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z81533-12|CAB04333.2| 356|Caenorhabditis elegans Hypothetical p... 27 8.3
Z81519-2|CAB04217.1| 468|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical p... 27 8.3
AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical... 27 8.3
AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical ... 27 8.3
>AF003139-2|AAB54165.1| 244|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7 protein.
Length = 244
Score = 92.7 bits (220), Expect = 1e-19
Identities = 43/102 (42%), Positives = 66/102 (64%)
Frame = +1
Query: 145 SKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERD 324
+KK+P VPE+V Q + + + +K+ + FKRAE+YV+EYR +++
Sbjct: 4 TKKVPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEKYVQEYRNAQKE 63
Query: 325 EIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVL 450
+RL R+A +G++YVP E K+AFV+RIRG+NQ+ PK RK L
Sbjct: 64 GLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRKAL 105
>AF016672-5|AAB66120.1| 951|Caenorhabditis elegans Hypothetical
protein F56D12.6b protein.
Length = 951
Score = 27.9 bits (59), Expect = 3.6
Identities = 15/76 (19%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +1
Query: 226 ITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKL-AFVI 402
++LK ++KK +E Q+VKE E + ++ ++ N+ ++Y+ + + A +
Sbjct: 1 MSLKVLQENLKKSEETVAEVAQFVKERLSVEDEYVKAINRSVNKVSHYIQNGSSIDAMWL 60
Query: 403 RIRGVNQVSPKVRKVL 450
+G ++ ++ +L
Sbjct: 61 LTKGTMELMAEIHVML 76
>AC006631-2|AAL02500.1| 142|Caenorhabditis elegans Hypothetical
protein F27B3.7 protein.
Length = 142
Score = 27.9 bits (59), Expect = 3.6
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Frame = +2
Query: 242 VPLPLRRGK-----KSLREPNNMSKNTASRSVMKSD 334
+PL +RR KS+ +P N+ NTA ++M SD
Sbjct: 25 IPLEIRRKHNLTQLKSMIDPQNLDDNTALEAIMNSD 60
>Z82095-7|CAN86628.1| 390|Caenorhabditis elegans Hypothetical
protein ZK849.2c protein.
Length = 390
Score = 27.1 bits (57), Expect = 6.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 224 RSHSRGVPLPLRRGKKSLREPNNMSKN 304
R +++G+ PLR KSLR+ N + K+
Sbjct: 233 RGNTKGLTAPLRHNFKSLRKRNGVGKS 259
>Z82095-6|CAI79281.2| 412|Caenorhabditis elegans Hypothetical
protein ZK849.2b protein.
Length = 412
Score = 27.1 bits (57), Expect = 6.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 224 RSHSRGVPLPLRRGKKSLREPNNMSKN 304
R +++G+ PLR KSLR+ N + K+
Sbjct: 255 RGNTKGLTAPLRHNFKSLRKRNGVGKS 281
>Z82095-5|CAB05026.2| 414|Caenorhabditis elegans Hypothetical
protein ZK849.2a protein.
Length = 414
Score = 27.1 bits (57), Expect = 6.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 224 RSHSRGVPLPLRRGKKSLREPNNMSKN 304
R +++G+ PLR KSLR+ N + K+
Sbjct: 257 RGNTKGLTAPLRHNFKSLRKRNGVGKS 283
>Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical protein
C47E8.8 protein.
Length = 1675
Score = 26.6 bits (56), Expect = 8.3
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 280 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIR 411
R +Q VKE I++R +LA NY + ++ FV+ ++
Sbjct: 1149 RMKQNVKEECIRQRFMSKLAPIIHRLDNYSIEARVRIIFVLSVK 1192
>Z81533-12|CAB04333.2| 356|Caenorhabditis elegans Hypothetical
protein F36G9.1 protein.
Length = 356
Score = 26.6 bits (56), Expect = 8.3
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -2
Query: 330 DFITL-LDAVFFDILFGSLKDFFPLLNGS 247
DF++L FF ILFG+ +F L+NG+
Sbjct: 295 DFLSLGYRLAFFIILFGAFCEFVSLINGT 323
>Z81519-2|CAB04217.1| 468|Caenorhabditis elegans Hypothetical
protein F29C12.5 protein.
Length = 468
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 261 LLNGSGTPLECDLKTASSECL 199
L+ GSG P+E L A ECL
Sbjct: 240 LIEGSGKPMEIRLDIAEKECL 260
>Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical
protein C47E8.8 protein.
Length = 1675
Score = 26.6 bits (56), Expect = 8.3
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 280 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIR 411
R +Q VKE I++R +LA NY + ++ FV+ ++
Sbjct: 1149 RMKQNVKEECIRQRFMSKLAPIIHRLDNYSIEARVRIIFVLSVK 1192
>AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical
protein Y18D10A.13 protein.
Length = 2417
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +2
Query: 203 HSELAVFRSHSRGVPLPLRRGKKSLREPNNMSKNTASRSVMKSDWQDR 346
H L F SH+ + ++RG + + N+ + + +SVM + +R
Sbjct: 1427 HRSLLTFTSHAIRLECDIKRGFATFSDANSSHRFSIIQSVMNQSFNNR 1474
>AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical
protein protein.
Length = 2417
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +2
Query: 203 HSELAVFRSHSRGVPLPLRRGKKSLREPNNMSKNTASRSVMKSDWQDR 346
H L F SH+ + ++RG + + N+ + + +SVM + +R
Sbjct: 1427 HRSLLTFTSHAIRLECDIKRGFATFSDANSSHRFSIIQSVMNQSFNNR 1474
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.134 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,822,557
Number of Sequences: 27780
Number of extensions: 212648
Number of successful extensions: 724
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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