Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_M03
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...   173   2e-44
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    27   1.9  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   5.9  
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    25   5.9  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    25   7.8  

>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score =  173 bits (421), Expect = 2e-44
 Identities = 89/182 (48%), Positives = 119/182 (65%), Gaps = 1/182 (0%)
 Frame = +1

Query: 28  IPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVRYHT 207
           +PN HFHKDWQR+VKTWFNQP R+ RR+Q R               +RP V+ PT+RY+ 
Sbjct: 9   LPNAHFHKDWQRYVKTWFNQPGRKLRRRQAR-QTKAAKIAPRPVEAIRPAVKPPTIRYNM 67

Query: 208 KVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRARLILFP 387
           KVRAGRGFTL E++A+G++   A TIGI VD RRRN+S ESLQ NV+R+K Y A LI+FP
Sbjct: 68  KVRAGRGFTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFP 127

Query: 388 -KGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLRGARSI 564
            K  +  KG+A +      T +   ++P+ Q A +  A+PITE+ KNF A+  L   R+ 
Sbjct: 128 RKAGQPKKGDATDVSGAEQTDV-AAVLPITQEAVEE-AKPITEEAKNFNAFSTLSNERAY 185

Query: 565 AK 570
           A+
Sbjct: 186 AR 187


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +1

Query: 406 KGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDE 519
           + E N ++ +  TQ +    PV+++ PK  + P+T  E
Sbjct: 470 RDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVTFSE 507


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 445 QLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLR 549
           Q   P+ PVQ   P   A+P  ED    +  + LR
Sbjct: 430 QPSSPVQPVQNVKPAQPAQPSLEDAAKRRVEEMLR 464


>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 262 NPSFARTIGIAVDPRRRNKSVESLQINV 345
           NPS A    +A D    ++S+ES   NV
Sbjct: 396 NPSVAAASNVAADQSTEDESIESTSTNV 423


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 359  NIELVLFFSRRARRY*RVKLMKKSANWLL 445
            N+E+ + F+   R+  R+ L KKS N LL
Sbjct: 1502 NMEMWIKFANLCRKSGRISLAKKSLNLLL 1530


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,241,539
Number of Sequences: 5004
Number of extensions: 41942
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)