Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_M02
(435 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 175 2e-45
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 132 3e-32
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 120 1e-28
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 119 2e-28
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 118 5e-28
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 109 2e-25
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 91 9e-20
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 90 2e-19
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 52 4e-08
SPAC1002.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 31 0.077
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 31 0.10
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 26 2.2
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo... 25 6.7
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 25 6.7
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 24 8.8
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 24 8.8
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 175 bits (426), Expect = 2e-45
Identities = 80/112 (71%), Positives = 101/112 (90%)
Frame = +2
Query: 98 YKDKSKPTDIRLSNINAAKAVSDAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMSV 277
++D+ KP ++RLSNI AA++V+DAIRTSLGP+GMDKMIQ GEV +TNDGATILK +SV
Sbjct: 11 FQDREKPQEVRLSNIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSV 70
Query: 278 IHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISD 433
+HPAAKMLV+LS AQD+EAGDGTTSVV++AG++L AEKLL+KGIHPTVI++
Sbjct: 71 LHPAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAE 122
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 132 bits (318), Expect = 3e-32
Identities = 62/100 (62%), Positives = 81/100 (81%)
Frame = +2
Query: 134 SNINAAKAVSDAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMSVIHPAAKMLVELS 313
S+I A K V++ +RTSLGPRG+DK++ + +GE+T+TNDGATIL QM V H AK+LV+LS
Sbjct: 38 SHILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATILDQMEVEHQIAKLLVQLS 97
Query: 314 RAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISD 433
++QD E GDGTT VVV+AGALL+ AE L+ KGIHP I+D
Sbjct: 98 KSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIAD 137
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 120 bits (288), Expect = 1e-28
Identities = 59/108 (54%), Positives = 75/108 (69%)
Frame = +2
Query: 104 DKSKPTDIRLSNINAAKAVSDAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMSVIH 283
D S+ LSNINA AV D IRT+LGP G DK++ GEV I+NDGATI+K + ++H
Sbjct: 18 DDSQGRGQLLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDGATIMKLLDIVH 77
Query: 284 PAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVI 427
PAAK LV+++RAQD E GDGTTSVVV AG LL A ++ G+ +I
Sbjct: 78 PAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLI 125
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 119 bits (286), Expect = 2e-28
Identities = 56/100 (56%), Positives = 74/100 (74%)
Frame = +2
Query: 128 RLSNINAAKAVSDAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMSVIHPAAKMLVE 307
++SNI AAKAV+D IRT LGPR M KM+ G V +TNDG IL+++ V HPAAK ++E
Sbjct: 21 QMSNIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTNDGHAILREIEVAHPAAKSMIE 80
Query: 308 LSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVI 427
L+R QD E GDGTTSV+++AG +L +A LL + IHP V+
Sbjct: 81 LARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVM 120
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 118 bits (283), Expect = 5e-28
Identities = 56/108 (51%), Positives = 77/108 (71%)
Frame = +2
Query: 104 DKSKPTDIRLSNINAAKAVSDAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMSVIH 283
+K D+R N+ A A+++ +++SLGP G+DKM+ G+VT+TNDGATIL + V H
Sbjct: 15 EKISGEDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSLLDVEH 74
Query: 284 PAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVI 427
PA K+LVEL++ QD E GDGTTSVV+IA LL A +L++ IHPT I
Sbjct: 75 PAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTI 122
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 109 bits (262), Expect = 2e-25
Identities = 54/103 (52%), Positives = 76/103 (73%), Gaps = 1/103 (0%)
Frame = +2
Query: 128 RLSNINAAKAVSDAIRTSLGPRGMDKMIQA-SNGEVTITNDGATILKQMSVIHPAAKMLV 304
RLS+ A AV D ++++LGP+GMDK++Q+ S+G++ +TNDGATILK +++ + AAK+LV
Sbjct: 22 RLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATILKSIALDNAAAKVLV 81
Query: 305 ELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISD 433
+S+ QD E GDGTTSV V A LL AE ++ IHP VI D
Sbjct: 82 NISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIID 124
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 90.6 bits (215), Expect = 9e-20
Identities = 40/99 (40%), Positives = 64/99 (64%)
Frame = +2
Query: 137 NINAAKAVSDAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMSVIHPAAKMLVELSR 316
NI+AA + D ++++LGP G KM+ G + +T DG +L +M + +P A + + +
Sbjct: 21 NISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVLLTEMQIQNPTASCIAKAAT 80
Query: 317 AQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISD 433
AQD GDGTTSV ++ G LL AE +++G+HP++ISD
Sbjct: 81 AQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISD 119
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 89.8 bits (213), Expect = 2e-19
Identities = 42/103 (40%), Positives = 66/103 (64%)
Frame = +2
Query: 122 DIRLSNINAAKAVSDAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMSVIHPAAKML 301
D + N NA + +S+ RTSLGP G +K++ + +TND ATI++++ VIHPAAK++
Sbjct: 26 DAVIRNCNAIRELSEITRTSLGPNGKNKIVVNHLQQTFLTNDAATIIRELEVIHPAAKLV 85
Query: 302 VELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVIS 430
V+ ++ Q+ E GD VVV G LL AE +++ G+ P I+
Sbjct: 86 VDATQQQENELGDAANFVVVFTGELLAKAENMIRMGLTPLEIA 128
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 52.0 bits (119), Expect = 4e-08
Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Frame = +2
Query: 101 KDKSKPTDIRLSNINAAKAVSDAIRTSLGPRGMDKMIQASNGEVTITNDGATILKQMSV- 277
KD D R S + ++ A+ +LGP+G + +I G IT DG T+ + +S+
Sbjct: 35 KDLKFGVDARASLLTGVDTLARAVSVTLGPKGRNVLIDQPFGSPKITKDGVTVARSVSLK 94
Query: 278 ---IHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHP 418
+ A+++ +++ + AGDGTT+ V+ A+ + + G +P
Sbjct: 95 DKFENLGARLVQDVASKTNEVAGDGTTTATVLTRAIFSETVRNVAAGCNP 144
>SPAC1002.20 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 101
Score = 31.1 bits (67), Expect = 0.077
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = -3
Query: 292 SSWMDYTHLFKNSSTIICNSHFTIRCLNHFIHSSRSQTCPNCIRYSFSGIYVAQP 128
S ++ + HL + + TI N FI CP+ + YSF IY P
Sbjct: 36 SDYIYFKHLTDRNDDALLKVDQTINKTNRFIFRKLKILCPSFLNYSFINIYCFGP 90
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 30.7 bits (66), Expect = 0.10
Identities = 25/96 (26%), Positives = 46/96 (47%)
Frame = -1
Query: 408 PFCNNFSAESSKAPAMTTTEVVPSPASIS*ARDSSTNILAAGWITLICLRIVAPSFVIVT 229
P + S SS + ++ SP+SIS + SS+ IL++ + L I + S + +
Sbjct: 587 PSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSPTPSTSSLMISSSSIISGS 646
Query: 228 SPLDA*IILSIPLGPRLVLIASDTALAAFMLLSRIS 121
S + + I +IP+ L +S ++ L+S S
Sbjct: 647 SSILSSSISTIPISSSLSTYSSSVIPSSSTLVSSSS 682
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 26.2 bits (55), Expect = 2.2
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -3
Query: 241 CNSHFTIRCLNHFIHSSRSQTCPNCIRYSFS 149
C F CL + SS S CP C R SF+
Sbjct: 1579 CRHKFHASCLYKWFKSSNSSRCPLC-RSSFT 1608
>SPBC244.02c |||U3 snoRNP-associated protein Utp6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 488
Score = 24.6 bits (51), Expect = 6.7
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = -3
Query: 370 TCNDHNRSSAITSLYILST*QFY*HFSSWMDYTH 269
T +D+ + L++ +T +F+ + W+DY H
Sbjct: 82 TISDYAGPRKVLFLFLRATNKFFGDVTLWLDYIH 115
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 24.6 bits (51), Expect = 6.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 210 IILSIPLGPRLVLIASDTALAAFMLL 133
+IL IPL PRL ++ L A+ +L
Sbjct: 527 VILMIPLDPRLKVLGISRDLLAYAIL 552
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 24.2 bits (50), Expect = 8.8
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -1
Query: 345 VPSPASIS*ARDSSTNILAAGWITL-ICLRIVAPSFVIVTSPLDA 214
VPS A++ + D STNI + G + + I +P+ V +P DA
Sbjct: 1058 VPSEAALRVSTDVSTNISSNGRADIPVDTLITSPADVPNNAPTDA 1102
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 24.2 bits (50), Expect = 8.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 199 HSSRSQTCPNCIRYSFSGIYVAQPNISRLALIFV 98
H+S+ +C N R +S AQ + R+ IF+
Sbjct: 862 HNSKFNSCCNIYRLGYSMCMRAQAYLKRMKDIFI 895
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,522,603
Number of Sequences: 5004
Number of extensions: 26153
Number of successful extensions: 74
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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