Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_M01
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    26   3.8  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    25   5.1  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   6.7  
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ...    25   8.9  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    25   8.9  
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p...    25   8.9  

>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 129 PWCITIIHGLV 161
           PWCI +IHG V
Sbjct: 202 PWCIPLIHGFV 212


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 430 WLLNGYRLNRSRLPYTCEKPPIMT 501
           WLLNG+ LN      +  KPP+++
Sbjct: 576 WLLNGFSLNGVLKYQSLLKPPVLS 599


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 164 LNQSVNNGYTPWISIGLPCRIKTNIYKYL 78
           LN ++N G + + SI +P     N+Y  L
Sbjct: 629 LNDNINEGLSTFPSIDIPASEADNVYSIL 657


>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
           Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +2

Query: 101 LFDTVNR*RSMVYNHYSRIGLTSVVINCMTPIQVTF 208
           LFD +NR ++  +N +  +  + VV+N +  +   F
Sbjct: 275 LFDHLNRKKTNNFNTHQILSQSDVVLNALLSVATAF 310


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +3

Query: 360 LELNKPVISNRMRPSITHILSSALAIERLSS 452
           +++ KP++S+R R SI   +  A A ERL++
Sbjct: 135 VQIAKPMLSSRERSSINRKVYPAEARERLTT 165


>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 485

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 112 GKPIEIHGV*PLFTDWFNF 168
           G  +E HG  P ++D FNF
Sbjct: 188 GNEVENHGYRPTYSDGFNF 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,056,999
Number of Sequences: 5004
Number of extensions: 41150
Number of successful extensions: 92
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)