Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_M01
         (517 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0325 + 2631637-2631882,2632715-2632788,2632874-2633006,263...    29   2.9  
05_04_0397 - 20937280-20937386,20937494-20939681                       28   5.1  

>01_01_0325 +
           2631637-2631882,2632715-2632788,2632874-2633006,
           2633091-2633172,2633471-2633580,2633659-2633751,
           2633854-2633904,2634013-2634105,2635257-2636129,
           2636204-2636316,2636436-2636448
          Length = 626

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 201 TWIGVMQLITTEVKPIRE*WLYTMDLYRFTVSNKNEHLQVFK 76
           TW  V +++     P++E      DLY FT S  + + ++FK
Sbjct: 205 TWALVKEMLMMMFSPVQEDERAASDLYVFTKSRDSVYFRIFK 246


>05_04_0397 - 20937280-20937386,20937494-20939681
          Length = 764

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -1

Query: 487 VFHKCTVIAIYLDDNRSIASAELRMCVMEGRMRLLITGLLSSNTLLYIYPV 335
           VF  CTVI + + DN  I           G++R+ ++ L +     + YP+
Sbjct: 454 VFDPCTVITVVVFDNNQIGKNGDARDESIGKVRIRLSTLETDRVYTHFYPL 504


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,058,704
Number of Sequences: 37544
Number of extensions: 268668
Number of successful extensions: 401
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)