Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_M01
         (517 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   2.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.5  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   10.0 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   10.0 

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 363 PTPYYIYTQFTNGLAVGQ 310
           PT YY   +F NGLA  Q
Sbjct: 291 PTGYYPTMRFRNGLAFPQ 308


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 363 PTPYYIYTQFTNGLAVGQ 310
           PT YY   +F NGLA  Q
Sbjct: 291 PTGYYPTMRFRNGLAFPQ 308


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 173 LQKLNQSVNNGYTPWISIGLPCRIKTNI 90
           L+ L  +  N   P    G P  +KTNI
Sbjct: 41  LENLLMNYENNQLPTHGKGTPTVVKTNI 68


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +3

Query: 24  TISIYILYIDVISIKYCI*ILVNVRFYS 107
           T  I I    + +  YCI +++ + +YS
Sbjct: 205 TNEIRIFVATIFTFSYCIPMILIIYYYS 232


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,324
Number of Sequences: 438
Number of extensions: 3110
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)