Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_L24
         (443 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical...    31   0.38 
U56961-5|AAK39298.2|  156|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AF025451-4|AAL16306.1|  567|Caenorhabditis elegans Hypothetical ...    29   2.0  
AF025451-3|AAB71200.2|  634|Caenorhabditis elegans Hypothetical ...    29   2.0  
U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily ass...    28   3.5  
AF047655-5|AAC04399.1|  820|Caenorhabditis elegans Hypothetical ...    28   3.5  
Z49911-1|CAA90131.2|  647|Caenorhabditis elegans Hypothetical pr...    27   4.6  
AC006641-12|AAF39810.1|  501|Caenorhabditis elegans Hypothetical...    27   4.6  
AC006641-10|AAF39811.1|  501|Caenorhabditis elegans Hypothetical...    27   4.6  
AC006641-8|AAF39822.1|  508|Caenorhabditis elegans Hypothetical ...    27   4.6  
Z78198-6|CAB01572.2|  848|Caenorhabditis elegans Hypothetical pr...    27   6.1  
U40939-1|AAA81700.1|  186|Caenorhabditis elegans Hypothetical pr...    27   6.1  
Z73972-8|CAI46601.1|  320|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
           protein Y26D4A.9 protein.
          Length = 1435

 Score = 31.1 bits (67), Expect = 0.38
 Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
 Frame = +1

Query: 28  KTFTETSNKILEMYKKTLEPQLKQLYETLGKMLQEYLESFIDIVAHFGALISDFFEKHKL 207
           K + E   + +E  KK L    +   E +GK  +E  +   ++    G       EK K 
Sbjct: 620 KYYLEKVKEAVEEVKKVLGVNYEDCLEKIGKAQEETEKVKTELEQEKGIDYQSILEKIKE 679

Query: 208 EIHELTNIVTEMFKD-ITRLIVAQ--LKELPGKITQVYEELVKLINNMPIIEAIKEK 369
              E+ N++   + D + ++  A+  L ++  K  +  EE+ K   N   +E  KE+
Sbjct: 680 AREEVKNVIRSDYTDCLNKVRKAEDTLAKIENKYKKESEEVKKTGKNKDKVEKTKEE 736


>U56961-5|AAK39298.2|  156|Caenorhabditis elegans Hypothetical
           protein T19D7.6 protein.
          Length = 156

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
 Frame = +1

Query: 196 KHKLEIHELT---NIVTEMFKDITRLIVAQLKELP---GKITQVYEELVKLINNMPIIEA 357
           K++  I +LT   N++TE   ++ +   A LKEL     KI  +   L  +  N P IE 
Sbjct: 43  KNRTRIEKLTLDNNVLTENSFNMPKF--ANLKELSVRNNKIRNLGVLLANIQKNCPNIEV 100

Query: 358 IKEKWNEGLPK 390
           ++ K N G+P+
Sbjct: 101 LRVKNNPGIPE 111


>AF025451-4|AAL16306.1|  567|Caenorhabditis elegans Hypothetical
           protein C24H12.4b protein.
          Length = 567

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = +1

Query: 262 LIVAQLKELPGKITQVYEELVKLINNMPIIEAI 360
           +I+A  KEL   ITQ+Y+  VKL   +P ++AI
Sbjct: 100 VIIAPTKEL---ITQIYKLFVKLSQALPFLQAI 129


>AF025451-3|AAB71200.2|  634|Caenorhabditis elegans Hypothetical
           protein C24H12.4a protein.
          Length = 634

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = +1

Query: 262 LIVAQLKELPGKITQVYEELVKLINNMPIIEAI 360
           +I+A  KEL   ITQ+Y+  VKL   +P ++AI
Sbjct: 167 VIIAPTKEL---ITQIYKLFVKLSQALPFLQAI 196


>U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 278 protein.
          Length = 1130

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +1

Query: 217 ELTNIVTEMFKDITRL--IVAQLKELPGKITQVYEELVKLINNMPIIEAIKEK 369
           EL  + TE    I RL  + ++  E   K  Q  EEL +    + ++EA KEK
Sbjct: 357 ELDQVKTETNDKIRRLTEVTSEFAEYRKKFQQQEEELRRKARLLTVVEAAKEK 409


>AF047655-5|AAC04399.1|  820|Caenorhabditis elegans Hypothetical
           protein C17B7.5 protein.
          Length = 820

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +1

Query: 295 KITQVYEELVKLINNMPIIEAIKE---KWNEGLPKDQLIAFYNPRYATFF 435
           ++T   + L K+INN    E   +   K    LPKD  +  ++P++ TFF
Sbjct: 187 QVTITMKYLYKIINNKGKAEMCIDDSLKNCSDLPKDDELMIFHPKFKTFF 236


>Z49911-1|CAA90131.2|  647|Caenorhabditis elegans Hypothetical
           protein M28.1 protein.
          Length = 647

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
 Frame = +1

Query: 73  KTLEPQLKQLYETLGKMLQEYLESFIDIVAHFGALI--SDFFEKHKLEIHELTNIVTEMF 246
           KT   QL      L K  +EY  +F   VA FG LI  S FF    + +  L  +V+  F
Sbjct: 493 KTDTNQLLPTPALLRKTFEEYERTFCVSVASFGILISASTFFATISIAVQFL--LVSRFF 550

Query: 247 KDITRLIVAQLKELPGKITQVYEELVKLI 333
              T  +  +    P  +   Y E+ K++
Sbjct: 551 CVQTEKLAEKSTNTPLSMRYSYFEIRKIL 579


>AC006641-12|AAF39810.1|  501|Caenorhabditis elegans Hypothetical
           protein F45D11.16 protein.
          Length = 501

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
 Frame = +1

Query: 112 LGKMLQEYLESFIDIVAHFGALISDFFEKHKLE-----IHELTNIVTEMFKDITRLIVAQ 276
           +GK++ E    ++     FG+L+ D  +  K E     + EL N+ +++ + +++ +V Q
Sbjct: 114 IGKIVFEKFPKYLQFFGPFGSLLKDILDMTKPEKKDPVLEELGNLKSQL-ESLSQKMVVQ 172

Query: 277 LKEL 288
             EL
Sbjct: 173 FDEL 176


>AC006641-10|AAF39811.1|  501|Caenorhabditis elegans Hypothetical
           protein F45D11.15 protein.
          Length = 501

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
 Frame = +1

Query: 112 LGKMLQEYLESFIDIVAHFGALISDFFEKHKLE-----IHELTNIVTEMFKDITRLIVAQ 276
           +GK++ E    ++     FG+L+ D  +  K E     + EL N+ +++ + +++ +V Q
Sbjct: 114 IGKIVFEKFPKYLQFFGPFGSLLKDILDMTKPEKKDPVLEELGNLKSQL-ESLSQKMVVQ 172

Query: 277 LKEL 288
             EL
Sbjct: 173 FDEL 176


>AC006641-8|AAF39822.1|  508|Caenorhabditis elegans Hypothetical
           protein F45D11.14 protein.
          Length = 508

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
 Frame = +1

Query: 112 LGKMLQEYLESFIDIVAHFGALISDFFEKHKLE-----IHELTNIVTEMFKDITRLIVAQ 276
           +GK++ E    ++     FG+L+ D  +  K E     + EL N+ +++ + +++ +V Q
Sbjct: 121 IGKIVFEKFPKYLQFFGPFGSLLKDILDMTKPEKKDPVLEELGNLKSQL-ESLSQKMVVQ 179

Query: 277 LKEL 288
             EL
Sbjct: 180 FDEL 183


>Z78198-6|CAB01572.2|  848|Caenorhabditis elegans Hypothetical
           protein F55C5.7 protein.
          Length = 848

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +1

Query: 19  QIIKTFTETSNKILEMYKKTLEPQLKQLYETLG--KMLQEYLESFIDIVAHFGALISDFF 192
           +++K  +  S+   EM+ K L   L+ + + L   + +  YL+    ++ H+ A I  FF
Sbjct: 589 KVVKLDSADSSNSKEMFLKNLWKALQTVQKQLSLRRRVWNYLDLPESLIVHWSAQIVSFF 648

Query: 193 EKHKLEIHE 219
                E HE
Sbjct: 649 FVLHAEHHE 657


>U40939-1|AAA81700.1|  186|Caenorhabditis elegans Hypothetical
           protein F13D11.3 protein.
          Length = 186

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +1

Query: 157 VAHFGALISDFFEKHKLEIH-ELTNIVTEMFKDITRLIVAQLKELPGKITQVYEELVKLI 333
           +A +G +     +++ +    + TN+ T+  K + R+ V        KITQ +E +VK I
Sbjct: 20  LAGYGCITPSLLKQYNITHGVDCTNLKTKPIKGLDRIEVPVDDNTLAKITQYFEPVVKYI 79

Query: 334 NN 339
            +
Sbjct: 80  ED 81


>Z73972-8|CAI46601.1|  320|Caenorhabditis elegans Hypothetical
           protein F15H10.9 protein.
          Length = 320

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +1

Query: 265 IVAQLKELPGKITQVYEELVKLINNMPIIEAIKEKWNEGLPKDQLIAFY 411
           IV +  +L  K+ ++Y+ + K+     I+E IK  WN     DQ+I ++
Sbjct: 87  IVKRAHDLYKKLKKLYKIIEKIEKIDEIVEFIKSLWNRA---DQVIDYF 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,140,546
Number of Sequences: 27780
Number of extensions: 159498
Number of successful extensions: 539
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)