Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_L24
         (443 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    24   0.65 
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    24   0.65 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.0  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   3.5  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   3.5  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   3.5  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 0.65
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -3

Query: 267 N*TSYVFKHFSHDIGELVNFQFMFLEEVTDECAEVCDDIDEAF 139
           N T Y  K ++HDI E  N    F  +V DE  +    + EA+
Sbjct: 247 NKTEYTLKIYTHDIPETYNVVRKF-RDVLDEFPQPKHMLIEAY 288


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 0.65
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -3

Query: 267 N*TSYVFKHFSHDIGELVNFQFMFLEEVTDECAEVCDDIDEAF 139
           N T Y  K ++HDI E  N    F  +V DE  +    + EA+
Sbjct: 247 NKTEYTLKIYTHDIPETYNVVRKF-RDVLDEFPQPKHMLIEAY 288


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +1

Query: 304 QVYEELVKLINNMPIIEAIKEKW--NEGLPKD 393
           + +EEL +L+    I  AIKEK   + G+ KD
Sbjct: 295 KAFEELEELLGKRNICIAIKEKLVKDSGVAKD 326


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
 Frame = +1

Query: 175 LISDFFEKHKLEIHELTNIVTEMFKDITRLIVAQLKELPGKITQVYEELVKLIN-NMPII 351
           LI D F+     I  +  I+    + ITR I+         I+Q     +K+   N  I+
Sbjct: 47  LIKDLFDNVHNHIQNIFKIIKSTNEKITRYIIRMF-----LISQQKTSKLKIYKWNNQIL 101

Query: 352 EAIKEKWNEGLPKDQLIAFYNPRYATFF 435
             +   + +   KD ++  Y   + TFF
Sbjct: 102 HILWTSYKKVFMKDNILRQY---FITFF 126


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
 Frame = +1

Query: 175 LISDFFEKHKLEIHELTNIVTEMFKDITRLIVAQLKELPGKITQVYEELVKLIN-NMPII 351
           LI D F+     I  +  I+    + ITR I+         I+Q     +K+   N  I+
Sbjct: 30  LIKDLFDNVHNHIQNIFKIIKSTNEKITRYIIRMF-----LISQQKTSKLKIYKWNNQIL 84

Query: 352 EAIKEKWNEGLPKDQLIAFYNPRYATFF 435
             +   + +   KD ++  Y   + TFF
Sbjct: 85  HILWTSYKKVFMKDNILRQY---FITFF 109


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +1

Query: 250 DITRLIVAQLKELPGKITQVYEELVKLINNMPIIEAIKE 366
           D  + +V +LK  PGK+  +  +L    + + +IE +++
Sbjct: 42  DKMKTLVEELKSKPGKLVPLQCDLSNQNDILKVIEWVEK 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,215
Number of Sequences: 438
Number of extensions: 1721
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)