Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_L23
         (540 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    31   0.082
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    26   4.1  
SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|ch...    26   4.1  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    25   9.5  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    25   9.5  
SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|ch...    25   9.5  
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces...    25   9.5  

>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 31.5 bits (68), Expect = 0.082
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 112 ISFNKVHFSFQSLSVTMAAVRLYHNLLI-KICPNPRDLFKIYCFYFC 249
           + F +V+F    L  T    +L+  L+I +IC NPR L ++Y  Y C
Sbjct: 504 VFFREVYFPMLDLKNTSYNQKLHTLLIIQRICLNPRALVELYINYDC 550



 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 206  LILEIFSKFIVFTFAACCSRFVNSHTCFSFRQLFIEYF 319
            L LE+FS+ I   + +CCS     +     R+L   YF
Sbjct: 1770 LPLELFSENIHTLYFSCCSMIAKENLDDQLRELLKNYF 1807


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -1

Query: 312 SINNCLKLKHVWLFTKREQHAAKVKTINFEKISRIRTDFYEQIMVKPDRRH 160
           +I N  K +H+    + + HAA  K +  E +S       +Q+ VK  RRH
Sbjct: 442 NITNSAKNEHIRSQRQHKTHAAPSKELTKESLSN------DQLSVKEKRRH 486


>SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = -1

Query: 372 AKYDAIPCGSEIKSKFKTKYSINNCLKLKHVWLFTKREQHAAKVKTINFEKISRIRTDFY 193
           AK++      E    +  K S N  LKL  +W+F K        KT  F +I ++ T   
Sbjct: 206 AKFEIAQLFEEPMKTYWLKKSANIDLKLFSIWVFRKFVVMPKLKKTNRFIEIPQLNTQ-- 263

Query: 192 EQIMV 178
           +QI++
Sbjct: 264 QQILL 268


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
 Frame = +1

Query: 94  VHLMSIISFNKVHFSFQS---LSVTMAAVRLYHNLLIKICPNPRDLFKIYCFYFC 249
           +H  S IS      + Q+   L +  A+  +   L +K      DL  +YCF FC
Sbjct: 716 IHPSSFISLESAQANLQTNEALQLVDASAHVLTKLRLKT-DKKLDLQSLYCFEFC 769


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 339 IKSKFKTKYSINNCLKLKHVWLFTKREQHAA 247
           +KS+  +  S N+ L     WLF  +++H A
Sbjct: 385 LKSRHTSSDSSNSLLSTFRSWLFDPKQKHTA 415


>SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/43 (23%), Positives = 20/43 (46%)
 Frame = +1

Query: 139 FQSLSVTMAAVRLYHNLLIKICPNPRDLFKIYCFYFCSVLFAF 267
           F + +V   +++ Y   ++K CP   D+F     Y   ++  F
Sbjct: 72  FSAKNVPSISIQAYLTRILKYCPATNDVFLSVLIYLDRIVHHF 114


>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 316

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 432 LQRKTIAGHYRPAGISRDLRAKYDAIPCGSEIKSKF 325
           LQR+++  H   +GISRD  + +   P  S+  S+F
Sbjct: 282 LQRRSVH-HLHDSGISRDSSSPFKRFPHLSDGSSRF 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,097,997
Number of Sequences: 5004
Number of extensions: 40666
Number of successful extensions: 122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)