Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_L23
         (540 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical...    34   0.075
U41015-1|AAA82317.2| 1396|Caenorhabditis elegans Multidrug resis...    31   0.40 
Z82276-4|CAB05241.3|  327|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U37429-13|AAA79343.1|  303|Caenorhabditis elegans Hypothetical p...    27   6.5  
AC006618-2|AAK68249.1|  340|Caenorhabditis elegans Glutamine syn...    27   6.5  
AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.      27   8.6  
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    27   8.6  

>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
           protein Y47G6A.29 protein.
          Length = 2460

 Score = 33.9 bits (74), Expect = 0.075
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = +1

Query: 13  SWITFYTLFFSKIYALSRFYNCLLDDFVHLMSIISFNKVHFSFQSLSVT 159
           +W TF  LFFS++ AL  F+  ++D ++ L    S N +HF    +S++
Sbjct: 34  AWSTFVVLFFSRVSAL--FFTFVIDKYLRL----SKNGIHFKIGGISIS 76


>U41015-1|AAA82317.2| 1396|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 6 protein.
          Length = 1396

 Score = 31.5 bits (68), Expect = 0.40
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +1

Query: 16  WITFYTLFFSKIYALSRFYNCLLDDFVHLMSIISFNKVHFSFQ 144
           W+    +FF      S F  C L  F+ +M+I+SF +VH+S+Q
Sbjct: 225 WLCPLLMFFYAYILWSMFGFCCLLGFLVMMAIVSF-QVHYSYQ 266


>Z82276-4|CAB05241.3|  327|Caenorhabditis elegans Hypothetical
           protein K03D3.4 protein.
          Length = 327

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 203 VLILEIFSKFIVFTFAACCSRFVNS 277
           + I +   K+IVF + ACCSR++ S
Sbjct: 143 ISIQKYIHKYIVFVYLACCSRYMLS 167


>U37429-13|AAA79343.1|  303|Caenorhabditis elegans Hypothetical
           protein F09E5.3 protein.
          Length = 303

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 19/74 (25%), Positives = 31/74 (41%)
 Frame = -1

Query: 423 KTIAGHYRPAGISRDLRAKYDAIPCGSEIKSKFKTKYSINNCLKLKHVWLFTKREQHAAK 244
           KTI        +S   RA + +I  GS+       K S+N  L++ +V     +  H   
Sbjct: 190 KTILATGELKTLSNVYRASWASILAGSDFIKTSTGKESVNATLEVAYVMCTAIKRWHELT 249

Query: 243 VKTINFEKISRIRT 202
            K + F+    I+T
Sbjct: 250 GKKVGFKPAGGIKT 263


>AC006618-2|AAK68249.1|  340|Caenorhabditis elegans Glutamine
           synthetase (glutamate-ammonia ligase) protein 1 protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -1

Query: 345 SEIKSKFKTKYSINNCLKLKHVWLFTKREQHAAKVKTINFE 223
           SE+ +K+      NN  ++ ++W+   +E    K KT +FE
Sbjct: 16  SELNAKYMALDQYNN-YQVMYIWIDATQENMRGKTKTFDFE 55


>AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.
          Length = 1751

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 215 EIFSKFIVFTFAACCSRFVNSHTCFSFRQLFIEY 316
           EIF  ++  T+  C    +NS  C   R+ FIE+
Sbjct: 340 EIFLAWLEATYLLCTRHELNSQECSRIRREFIEH 373


>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
           anchorage protein1 protein.
          Length = 8545

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 215 EIFSKFIVFTFAACCSRFVNSHTCFSFRQLFIEY 316
           EIF  ++  T+  C    +NS  C   R+ FIE+
Sbjct: 340 EIFLAWLEATYLLCTRHELNSQECSRIRREFIEH 373


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,775,990
Number of Sequences: 27780
Number of extensions: 234144
Number of successful extensions: 590
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)