Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_L23
         (540 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.6  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   4.6  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   4.6  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   8.1  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +1

Query: 40  FSKIYALSRFYNCLLDDFVHLMSIISFNKVHFSFQSLSV 156
           F+ ++  SRF     D F+ L  + +   V  + Q+L V
Sbjct: 126 FNSVWGASRFLELAPDSFLGLRELHTLEIVESNVQALPV 164


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = +2

Query: 200 SVLILEIFSKFIVFTFAACCSRFVNSHTCFSFRQLFIEYFVL 325
           S+ ++ + S   V +F  CC     SH C +        F+L
Sbjct: 52  SITLIVLGSIIFVISFFGCCGAIRESH-CMTITFASFLLFIL 92


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 85  DDFVHLMSIISFNKV 129
           DD +H+  +IS NK+
Sbjct: 409 DDNIHIKGVISLNKL 423


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 438 QRLQRKTIAGHYRPAGISRD 379
           + L RKTI  +Y P  +S D
Sbjct: 408 RNLGRKTIMVNYNPETVSTD 427


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,081
Number of Sequences: 438
Number of extensions: 3155
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)