Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_L22
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   1.6  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    27   1.6  
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    25   4.8  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    25   8.4  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   8.4  

>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 20   MLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLD 133
            M+ +D EP +S C  LL  +     D + MVS  E  +
Sbjct: 1281 MVESDYEPDVSLCPELLSLAIDFPGDPFVMVSKMEKYE 1318


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 263 PIKDCTSVDLQCRHHLPLSR 204
           P K+C +  L+C +H+P SR
Sbjct: 46  PCKNCKAGKLECTYHMPSSR 65


>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 272 QARTAFTNSALLLAEQYGFDGIDLSWQLPK 361
           Q  T F  S+L +A   G+D I L W L K
Sbjct: 531 QGVTEFVPSSLGVALAKGYDEIGLEWSLTK 560


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 154 ISVRPINVQILIE*NHFICVS 92
           I  RPI   + I+  HFIC S
Sbjct: 197 IHARPIQTSVRIDTTHFICSS 217


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
 Frame = +2

Query: 125  NLDIDRAHANYRAITNLKRQFPQLRV---FLTVGGDDDTEDPQKYNL 256
            ++ +  AH  +    N  RQFP L V   F   G D        YNL
Sbjct: 950  SIALSTAHVQHGDTLNYSRQFPNLFVQGAFNRFGYDGSMPSKMSYNL 996


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,996,273
Number of Sequences: 5004
Number of extensions: 38395
Number of successful extensions: 126
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)