Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_L22
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0234 + 15187065-15188241,15188316-15188494 45 3e-05
04_03_0649 - 18402976-18403220,18403305-18404499 38 0.004
08_01_0192 + 1594530-1594682,1594755-1594955,1595051-1595280,159... 30 0.90
05_03_0086 + 8279518-8280320,8280923-8281844 30 0.90
10_08_0009 + 14075929-14076789 29 2.1
03_02_0517 + 9054816-9055655 29 2.7
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 29 2.7
08_02_0992 + 23380855-23381195,23382464-23382506,23383306-233833... 28 4.8
04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965... 27 6.3
04_04_1358 + 32869222-32869306,32869947-32870008,32870301-328703... 27 6.3
02_05_1001 + 33423562-33424098 27 6.3
12_02_0918 - 24299620-24299748,24299890-24300037,24303105-243032... 27 8.4
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 45.2 bits (102), Expect = 3e-05
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Frame = +2
Query: 50 SFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITNLKRQFPQLRVFLTVGGDDD 229
S +HL Y S I +T V+ + + +N+ + ++ L++G D+
Sbjct: 62 SLYSHLYYSSLSID-ETRCAVAPPSSGEESSILSNFSSSIKSSGGGFAVKTILSIGTDEF 120
Query: 230 TEDPQK--YNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 358
ED ++ + R AF NS++ LA GFDG+DL+W+ P
Sbjct: 121 REDVSNAAFSRMASEKNLRRAFINSSIELARANGFDGLDLAWRFP 165
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 37.9 bits (84), Expect = 0.004
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +2
Query: 236 DPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 358
DP + + P +R AF +A+ +A + GFDG+D++W+ P
Sbjct: 131 DPA-FAAMAADPASRAAFIGAAVKVARENGFDGLDVAWRFP 170
>08_01_0192 +
1594530-1594682,1594755-1594955,1595051-1595280,
1595596-1595766,1595902-1596007,1596339-1596545,
1596638-1596802
Length = 410
Score = 30.3 bits (65), Expect = 0.90
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +2
Query: 290 TNSALLLAEQYGFDGIDLSWQLPKRKPKKIRSSIGSFW 403
T +L+ E + FD L+W + R P +I++++ +W
Sbjct: 339 TKKMILVGEVFRFDLDTLTWSVIGRMPFRIKTALAGYW 376
>05_03_0086 + 8279518-8280320,8280923-8281844
Length = 574
Score = 30.3 bits (65), Expect = 0.90
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +2
Query: 254 LLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLPKR-KPKKIRSSIGSFWHSIKKTFGT 430
LL++ P R AFT A + + FDG+ +W L + P + + F T
Sbjct: 478 LLVKEPHKRIAFTRGATEIKQHPFFDGV--NWALVRSLTPPSVPEPV-DFRQYAAAASAT 534
Query: 431 TPVDDKESEH 460
TP D K E+
Sbjct: 535 TPKDKKPPEN 544
>10_08_0009 + 14075929-14076789
Length = 286
Score = 29.1 bits (62), Expect = 2.1
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Frame = +2
Query: 137 DRAHANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALL--- 307
D A+ + A+ K P L V L +GGD T N + A+ +A
Sbjct: 62 DTANLSPAAVAAAKAAHPNLSVILALGGD--TVQNTGVNATFAPTSSVDAWVRNAADSVS 119
Query: 308 -LAEQYGFDGIDLSWQ 352
L + YG DG+D+ ++
Sbjct: 120 GLIDAYGLDGVDVDYE 135
>03_02_0517 + 9054816-9055655
Length = 279
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +3
Query: 15 HVCCLRTWSLLFRSAPICCTNLPASKLTHIKWFHSMRIWTL 137
H C+ W L S P+C LPA+ + + IW L
Sbjct: 158 HQDCILPWLSLRNSCPVCRRELPAAAAPESEADAGLTIWRL 198
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 28.7 bits (61), Expect = 2.7
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Frame = +2
Query: 179 RQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 358
R P L + + D D +YNLL + A +Y FDG L L
Sbjct: 5215 RMSPILNMVIEPSFDFDDPPTHQYNLLEPTSIITRKHVLGAHTWDHEYNFDGASLEKTLV 5274
Query: 359 KRKPKK-IRSSIGSFWHSIKKT 421
KP K +++ F +KK+
Sbjct: 5275 LHKPTKCFEATLVEFSKDMKKS 5296
>08_02_0992 +
23380855-23381195,23382464-23382506,23383306-23383371,
23384228-23384428,23384450-23384707,23384798-23385013,
23385148-23385321,23386151-23386312,23386594-23386635
Length = 500
Score = 27.9 bits (59), Expect = 4.8
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Frame = +2
Query: 68 LYKSAGIQADTYKMVSLNENLDIDRAHANYR-AITNLKRQFPQLRVFLTVGGDDDTE--D 238
L + Q Y+++S+NE D A YR AI N Q ++ V + E
Sbjct: 3 LSSNISTQKTHYEVLSVNEGATYDEVRAGYRAAILNAHPDKSQAKLDSLVSSVEHGEFFS 62
Query: 239 PQKYNLLLESPQARTAF 289
QK +L P++RT +
Sbjct: 63 VQKAWEVLRDPKSRTEY 79
>04_04_1630 - 34896021-34896143,34896329-34896403,34896500-34896556,
34897176-34897352,34897426-34897492,34898043-34898101,
34898188-34898241,34898455-34898604,34898709-34898918,
34898980-34899039,34899399-34899527,34899616-34899720,
34899935-34900024,34900630-34900695,34901047-34901115,
34901348-34901467,34901572-34901634,34901681-34901817,
34902070-34902160,34902298-34902463,34902700-34904172,
34905666-34905940,34906322-34906819,34906996-34907145,
34907840-34907911,34908006-34908266,34908478-34908558,
34908745-34908996,34909323-34909382,34909602-34909853,
34910385-34910549,34910589-34910849,34911267-34912307,
34913398-34913457,34914055-34914165,34914448-34914534,
34915227-34915300,34915397-34915490,34915644-34915689,
34916397-34916521
Length = 2501
Score = 27.5 bits (58), Expect = 6.3
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 128 LDIDRAHANYRAITNLKRQFPQLRVFL 208
+ +D ANYRA+ L + FP ++ F+
Sbjct: 2373 ITLDTPGANYRAVWALSKYFPNVKTFV 2399
>04_04_1358 +
32869222-32869306,32869947-32870008,32870301-32870393,
32870640-32870761,32873139-32873167,32873586-32873891,
32873977-32874035,32874148-32874279,32874414-32874455,
32874560-32875093,32875189-32875379,32875538-32876027,
32876273-32876335,32876704-32876805,32876895-32877215,
32877294-32877386,32877484-32877585,32877718-32877822,
32877933-32878066,32878429-32878612,32879226-32879357,
32879447-32879559,32879628-32879709,32880328-32881992
Length = 1746
Score = 27.5 bits (58), Expect = 6.3
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = +2
Query: 263 ESPQARTAFTNSALLLAEQYGFDGIDLSWQLPKRKPKKIRSSIGSFW-HSIKKTFGTTPV 439
+ P ++ N A L + D + +P P+ IR +GS W +++K
Sbjct: 569 QCPTPQSHVDNHARKLVRKILEDSLMKLENMPANNPRTIRWELGSSWLQNLQKKDSPASE 628
Query: 440 DDKESEHREGFTAL 481
D K + H E T +
Sbjct: 629 DKKNAGHVEKETTI 642
>02_05_1001 + 33423562-33424098
Length = 178
Score = 27.5 bits (58), Expect = 6.3
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -2
Query: 147 CARSMSKFSLSETILYVSA--WMPADLYSRWVQNERA 43
CA S E + + S W PAD+ + WV ERA
Sbjct: 80 CALVHSHGPYGENLFHGSGVGWAPADVVAAWVSRERA 116
>12_02_0918 -
24299620-24299748,24299890-24300037,24303105-24303280,
24305870-24305917,24306005-24306116,24306209-24306468
Length = 290
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 140 RAHANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQK 247
RAH + + R+ RV VGG DD ED ++
Sbjct: 109 RAHPSLHVLVGWARRMIGFRVSTPVGGCDDEEDGRR 144
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,965,425
Number of Sequences: 37544
Number of extensions: 248914
Number of successful extensions: 769
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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