Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_L21
         (542 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    25   0.66 
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   3.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   6.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   8.1  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 24.6 bits (51), Expect = 0.66
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +2

Query: 416 VDSVLDVVRKEAESCDCLQG 475
           +DS+++++R   ++CD L G
Sbjct: 106 IDSIINIIRVRVDACDRLWG 125


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 438 FARKQSHVIVYKDSNSHTP 494
           FA   SH I+Y  +  H P
Sbjct: 254 FAGLHSHTIIYLSAKGHRP 272


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 388 GTLHGRC*ASRFRLRRSS 441
           GTL+GRC      L RS+
Sbjct: 551 GTLYGRCKREGIELSRSN 568


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 79  NEGNRAHPGRTMRKPD 126
           NE N   PGR   KP+
Sbjct: 391 NESNITWPGRLQTKPE 406


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,064
Number of Sequences: 438
Number of extensions: 2494
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)