Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_L20
         (326 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    25   2.9  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    25   3.8  
SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces ...    24   5.1  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    24   5.1  
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    24   6.7  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    24   6.7  
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    23   8.8  
SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase YakC|Schizo...    23   8.8  

>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 325 HSLARVVSDYRSLMYXHIFFGVIPIDETISTLDVE 221
           H LA VV D + +    I  G + + + IS +D+E
Sbjct: 231 HDLAAVVDDDKDIAQSIINAGKVSMGQDISEIDLE 265


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 209 TVKWFNVKSGYG-FINRNDTKEDVXVHQTAI 298
           T+KW N+ SG G F+ + +  ED+   +  I
Sbjct: 879 TIKWDNLNSGPGPFVPQTENVEDLTYFEKNI 909


>SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 255 LLMKPYPLLTLNHLTVPETFSAMTCFCLAGL 163
           LL + Y L   ++  +PE+  A  CF +  L
Sbjct: 53  LLQRAYALRACSNSLLPESIEARKCFLIESL 83


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
 Frame = -1

Query: 59  MVNP--PRPLLDVNNPSLSP 6
           ++NP  P P L VN+PSL P
Sbjct: 377 LMNPSTPEPSLGVNSPSLRP 396


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 323 QPCEGCFGLSQFDVXTHLLWC 261
           +PC+  F + + +  THL WC
Sbjct: 243 RPCQLEFSIERGNGVTHLQWC 263


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 89  CNWRTAMVAKMVNPPRPL 36
           CN  TA++A+  NPP P+
Sbjct: 211 CNQITALLARNGNPPIPM 228


>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 268 RRCVCTSNCDNPKQPSQ 318
           + C+  + CDNP +PSQ
Sbjct: 582 QNCLYFAVCDNPYKPSQ 598


>SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase
           YakC|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 322 SLARVVSDYRSLMYXHIFFGVIPIDETISTL 230
           SL R+  D   L Y H F G  PI++ +  L
Sbjct: 111 SLKRLGIDCIDLYYVHRFSGETPIEKIMGAL 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,116,129
Number of Sequences: 5004
Number of extensions: 14547
Number of successful extensions: 37
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)