Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_L20
(326 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0202 - 1638978-1639571 47 3e-06
02_01_0158 - 1103461-1104186 46 9e-06
05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,753... 29 0.86
10_08_0021 + 14217455-14217505,14217742-14217909,14219137-142193... 27 2.6
09_02_0515 + 10121849-10122149,10132151-10132187,10132314-101327... 27 2.6
09_02_0161 + 5121977-5122318,5123883-5124007,5124815-5125112 27 2.6
01_05_0718 - 24575946-24576121,24576721-24576874,24576964-245770... 27 2.6
01_06_0147 + 26997641-26997688,26997783-26997857,26997966-269980... 26 6.1
01_01_1200 - 9670109-9670165,9670569-9670664,9670886-9670969,967... 26 8.0
>08_01_0202 - 1638978-1639571
Length = 197
Score = 47.2 bits (107), Expect = 3e-06
Identities = 18/36 (50%), Positives = 27/36 (75%)
Frame = +2
Query: 191 AEKVSGTVKWFNVKSGYGFINRNDTKEDVXVHQTAI 298
+E+V GTVKWF+ G+GFI +D ED+ VHQ+++
Sbjct: 3 SERVKGTVKWFDATKGFGFITPDDGGEDLFVHQSSL 38
>02_01_0158 - 1103461-1104186
Length = 241
Score = 45.6 bits (103), Expect = 9e-06
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +2
Query: 191 AEKVSGTVKWFNVKSGYGFINRNDTKEDVXVHQTAI 298
A + GTVKWFN G+GFI+ +D ED+ VHQ++I
Sbjct: 4 AARHRGTVKWFNDTKGFGFISPDDGSEDLFVHQSSI 39
>05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,
7535889-7535932,7536042-7536146,7536223-7536344,
7536807-7536894,7536966-7537052,7537718-7537786,
7537859-7538188,7539777-7539824,7540003-7540069,
7540150-7540208,7541220-7541453,7541536-7541601,
7541684-7541883,7542104-7542197,7542295-7542414,
7542596-7542703,7542808-7542871,7543378-7543409,
7546049-7548007
Length = 1407
Score = 29.1 bits (62), Expect = 0.86
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 311 GCFGLSQFDVXTHLLWCHS 255
GC+GL QF + LL CHS
Sbjct: 1107 GCYGLPQFRMRVFLLGCHS 1125
>10_08_0021 +
14217455-14217505,14217742-14217909,14219137-14219340,
14219429-14219601,14219970-14220066,14220183-14220336,
14222029-14222209,14222858-14222898,14223146-14223231,
14223282-14223389,14223538-14223579
Length = 434
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 322 SLARVVSDYRSLMYXHIFFGVIPIDETISTL 230
SL R+ DY L Y H +PI+ET+ L
Sbjct: 115 SLERLAVDYIDLYYQHRIDQSVPIEETMGEL 145
>09_02_0515 +
10121849-10122149,10132151-10132187,10132314-10132790,
10133184-10133733
Length = 454
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +2
Query: 200 VSGTVKWFNVKSGYGFINRNDTKEDVXVHQTAIIRN 307
V+ VKW +KSG F N KE + RN
Sbjct: 195 VAAAVKWLKIKSGQAFAVENYVKEFATISLAIRHRN 230
>09_02_0161 + 5121977-5122318,5123883-5124007,5124815-5125112
Length = 254
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 185 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVXVHQTAIIRNNPR 316
+++E+V GTVKWF+ + E+ V T ++R R
Sbjct: 1 MVSERVKGTVKWFDATAAME-ATAATAGEEAAVCATCVVRRATR 43
>01_05_0718 -
24575946-24576121,24576721-24576874,24576964-24577060,
24577142-24577314,24577426-24577629,24577725-24577892,
24577938-24578084
Length = 372
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2
Query: 322 SLARVVSDYRSLMYXHIFFGVIPIDETISTL 230
SL R+ DY L Y H IPI++TI L
Sbjct: 147 SLGRLGVDYIDLYYQHRVDTTIPIEDTIGEL 177
>01_06_0147 +
26997641-26997688,26997783-26997857,26997966-26998052,
26998566-26998622,26998867-26998959,26999528-26999600,
26999830-26999905,27000217-27000280,27000951-27000980,
27001251-27001367,27002742-27002782,27002870-27003176,
27003279-27003368,27003479-27003541,27003678-27003752,
27003922-27003984,27004714-27004784,27004885-27005068
Length = 537
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 33 KERSWRIYHLSHHRRSPITSWL 98
++R+ Y + HH SPI SW+
Sbjct: 295 RDRNTGSYSVKHHYPSPIVSWI 316
>01_01_1200 -
9670109-9670165,9670569-9670664,9670886-9670969,
9671050-9671118,9671892-9671993,9672807-9672872,
9673791-9673841,9673953-9674048,9674141-9674279,
9674343-9674424,9674528-9674723
Length = 345
Score = 25.8 bits (54), Expect = 8.0
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 230 KSGYGFINRNDTKEDVXVHQTA 295
KSG GF+ R DTK+ V Q A
Sbjct: 230 KSGVGFVARYDTKKMVATGQIA 251
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,362,799
Number of Sequences: 37544
Number of extensions: 98596
Number of successful extensions: 372
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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