Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_L18
         (522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    28   0.73 
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    28   0.73 
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    27   2.2  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    26   3.9  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    25   6.8  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    25   9.0  
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ...    25   9.0  

>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = +3

Query: 93  KKNISVISDI*VTLSELKKSLSKPTQVTIPSHLSPLSYR 209
           K+N S  S + ++ + L+ S S PT  T PSH  P+SY+
Sbjct: 609 KQNKSSTSTLQIS-APLETSQSPPTPRTKPSHKPPVSYK 646


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -1

Query: 291 RVWSKYEICYFKNTCNYSQRIIIY*KLVCTIAARDAKESSLV 166
           R+W+ + +   +    YS+ + +Y KL+C+ A R+    SL+
Sbjct: 591 RIWNYWLVALIQQKL-YSRAVKVYSKLICSSAVRNDTTRSLI 631


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 949

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -2

Query: 440  SVLSFGSVIHIYILAGCPRLRPGFIYIYLDKLKLK---GPRNDFKLPGVQ 300
            S++    V+H Y    C  + P  I ++ D+L+L+     RN  K PGV+
Sbjct: 864  SLIKLYKVLHRYSQRDCVEVIPDVIRMFEDRLQLELTDIARNPSKWPGVR 913


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = -3

Query: 109 TLMFFLKHFNELNQTLKRLILTFEGRLECELRDS 8
           T  FFL H N  N  L +    F G   CE  D+
Sbjct: 670 TPSFFLNHSNFENIALSKETFNFGGEANCENTDT 703


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -3

Query: 331  QGMISNYQEFKINKSLVKIRDLLFQKHVQLFTKNYY 224
            QG ++     K+N+   ++ D + + H+Q F K +Y
Sbjct: 1057 QGPMAAKHSTKVNEPAKELLDGINETHIQHFIKKFY 1092


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 147 KSLSKPTQVTIPSHLSPLSYRLIFN 221
           +S+S P  +    HLSPL+ +  FN
Sbjct: 407 RSISNPLHLVDSQHLSPLNRKTHFN 431


>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 485

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/44 (25%), Positives = 26/44 (59%)
 Frame = -3

Query: 307 EFKINKSLVKIRDLLFQKHVQLFTKNYYLLKISLYDSGERCEGI 176
           EF+ ++S+ +++ ++  +  +    +   + I +YD+GE  EGI
Sbjct: 51  EFRKHRSIRRLQSMIVPEAGKSIQLSSSGVPIEIYDAGEEDEGI 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,873,980
Number of Sequences: 5004
Number of extensions: 34876
Number of successful extensions: 80
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)