Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_L18
         (522 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0441 + 18256103-18258076                                         30   1.3  
08_02_1526 + 27662697-27663401                                         29   2.3  
09_04_0334 + 16779883-16780150,16780618-16781828                       28   4.0  
06_01_0504 + 3632108-3632281,3633532-3633699,3633797-3633883,363...    28   4.0  
12_01_0411 + 3276679-3276687,3277430-3277493,3278256-3278297,327...    28   5.2  
05_05_0112 - 22480639-22480905,22480991-22481287,22481707-224818...    27   6.9  

>07_03_0441 + 18256103-18258076
          Length = 657

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 409 ICITLPKESTERNLNNLFPRHSTVFVSINLCVD 507
           +CI L +E  ER + N  P+H+ V V   LC D
Sbjct: 311 VCIGLFQEMEERGMGNDIPQHAYVLVIGALCKD 343


>08_02_1526 + 27662697-27663401
          Length = 234

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = -3

Query: 319 SNYQEFKINKSLVKIRDL---LFQKHVQLFTKNYYLLKISLYDSGERCEGIVTC 167
           SN ++ KI K L + R++   LFQ  V L +K   + K+SL     + + +V C
Sbjct: 142 SNKEDCKIVKLLSEAREITTSLFQSTVHLLSKQIEMPKLSLISRAFQKKNLVVC 195


>09_04_0334 + 16779883-16780150,16780618-16781828
          Length = 492

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -2

Query: 377 PGFIYIYLDKLKLKGPRNDFKLPGVQNKQEFGQNTRFVI 261
           P FI  +L+  K K   + F +PGV  KQ  G+NT F++
Sbjct: 155 PCFISAHLECSKQKP--SIFMVPGVYEKQNNGENTSFLM 191


>06_01_0504 +
           3632108-3632281,3633532-3633699,3633797-3633883,
           3634766-3634876,3635114-3635205,3635288-3635393,
           3635475-3635561,3637796-3638209
          Length = 412

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = -3

Query: 337 KDQGMISNYQEFKINKSLVKIRDLLFQKHVQLFTKNYYLLKISLYDSGE 191
           K    IS Y EF  N  LVK   L FQKH     + +  +++S     E
Sbjct: 117 KQVDKISKYYEFHYNTRLVKPSILHFQKHPGSLLEGFSGVQVSTLSVNE 165


>12_01_0411 +
           3276679-3276687,3277430-3277493,3278256-3278297,
           3279047-3279063,3280011-3281258
          Length = 459

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -2

Query: 377 PGFIYIYLDKLKLKGPRNDFKLPGVQNKQEFGQNTRFVI 261
           P FI  +L+  KLK P +    PG   KQ+ GQN  F++
Sbjct: 118 PIFINAHLEWSKLK-PSSLLMAPGFYQKQKNGQNIAFLM 155


>05_05_0112 -
           22480639-22480905,22480991-22481287,22481707-22481836,
           22482167-22482492,22482609-22482830,22483372-22483684,
           22483795-22483850
          Length = 536

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 129 TLSELKKSLSKPTQVTIPSHLSPLSYR 209
           T+  L    SKPT +  P H+ PL YR
Sbjct: 215 TIFTLASPDSKPTDLRRPGHIFPLKYR 241


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,856,612
Number of Sequences: 37544
Number of extensions: 186493
Number of successful extensions: 386
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)