Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_L16
(611 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 189 2e-48
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 189 2e-48
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 189 2e-48
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 149 2e-36
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 149 2e-36
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 74 7e-14
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 74 7e-14
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 74 7e-14
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 73 2e-13
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 72 4e-13
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 72 4e-13
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 68 6e-12
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 61 7e-10
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 58 4e-09
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 54 8e-08
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 51 6e-07
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 51 6e-07
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 50 1e-06
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 45 5e-05
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 43 2e-04
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 43 2e-04
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 42 3e-04
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 41 8e-04
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 36 0.017
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.12
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.12
Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical p... 30 1.1
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 30 1.1
Z81519-2|CAB04217.1| 468|Caenorhabditis elegans Hypothetical pr... 27 8.0
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 189 bits (460), Expect = 2e-48
Identities = 86/113 (76%), Positives = 96/113 (84%)
Frame = +1
Query: 271 KQVFERTKPHCNVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYSDIDNAPEEKARGIT 450
K VF+R KPH NVGTIGHVDHGKTTLT+AITK+L+ A+ + Y DIDNAPEEKARGIT
Sbjct: 40 KAVFKRDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGIT 99
Query: 451 INVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQ 609
IN H+EY+T +RHY H DCPGHADYIKNMITG AQM+GAILVVAATDG MPQ
Sbjct: 100 INAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMPQ 152
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 189 bits (460), Expect = 2e-48
Identities = 86/113 (76%), Positives = 96/113 (84%)
Frame = +1
Query: 271 KQVFERTKPHCNVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYSDIDNAPEEKARGIT 450
K VF+R KPH NVGTIGHVDHGKTTLT+AITK+L+ A+ + Y DIDNAPEEKARGIT
Sbjct: 41 KAVFKRDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGIT 100
Query: 451 INVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQ 609
IN H+EY+T +RHY H DCPGHADYIKNMITG AQM+GAILVVAATDG MPQ
Sbjct: 101 INAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMPQ 153
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 189 bits (460), Expect = 2e-48
Identities = 86/113 (76%), Positives = 96/113 (84%)
Frame = +1
Query: 271 KQVFERTKPHCNVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYSDIDNAPEEKARGIT 450
K VF+R KPH NVGTIGHVDHGKTTLT+AITK+L+ A+ + Y DIDNAPEEKARGIT
Sbjct: 41 KAVFKRDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGIT 100
Query: 451 INVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQ 609
IN H+EY+T +RHY H DCPGHADYIKNMITG AQM+GAILVVAATDG MPQ
Sbjct: 101 INAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMPQ 153
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 149 bits (360), Expect = 2e-36
Identities = 67/106 (63%), Positives = 83/106 (78%)
Frame = +1
Query: 292 KPHCNVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYSDIDNAPEEKARGITINVAHVE 471
K + NVGTIGH+DHGKTTLT+AIT+V + A+ + +ID EEK RGITINVAH+
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITINVAHIG 102
Query: 472 YQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQ 609
Y++ R Y HTDCPGH+D+IKNMI GT+QMD A+LV+AATDGVM Q
Sbjct: 103 YESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVMEQ 148
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 149 bits (360), Expect = 2e-36
Identities = 67/106 (63%), Positives = 83/106 (78%)
Frame = +1
Query: 292 KPHCNVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYSDIDNAPEEKARGITINVAHVE 471
K + NVGTIGH+DHGKTTLT+AIT+V + A+ + +ID EEK RGITINVAH+
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITINVAHIG 102
Query: 472 YQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQ 609
Y++ R Y HTDCPGH+D+IKNMI GT+QMD A+LV+AATDGVM Q
Sbjct: 103 YESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVMEQ 148
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 74.1 bits (174), Expect = 7e-14
Identities = 45/119 (37%), Positives = 64/119 (53%), Gaps = 15/119 (12%)
Frame = +1
Query: 286 RTKPHCNVGTIGHVDHGKTTLTAAITKVLSDLNL---------AQKKGYSD------IDN 420
+ K H N+ IGHVD GK+T T + ++ AQ+ G +D
Sbjct: 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62
Query: 421 APEEKARGITINVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDG 597
E+ RGITI++A +++T + + D PGH D+IKNMITGT+Q D A+LVVA G
Sbjct: 63 LKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTG 121
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 74.1 bits (174), Expect = 7e-14
Identities = 45/119 (37%), Positives = 64/119 (53%), Gaps = 15/119 (12%)
Frame = +1
Query: 286 RTKPHCNVGTIGHVDHGKTTLTAAITKVLSDLNL---------AQKKGYSD------IDN 420
+ K H N+ IGHVD GK+T T + ++ AQ+ G +D
Sbjct: 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62
Query: 421 APEEKARGITINVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDG 597
E+ RGITI++A +++T + + D PGH D+IKNMITGT+Q D A+LVVA G
Sbjct: 63 LKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTG 121
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 74.1 bits (174), Expect = 7e-14
Identities = 45/119 (37%), Positives = 64/119 (53%), Gaps = 15/119 (12%)
Frame = +1
Query: 286 RTKPHCNVGTIGHVDHGKTTLTAAITKVLSDLNL---------AQKKGYSD------IDN 420
+ K H N+ IGHVD GK+T T + ++ AQ+ G +D
Sbjct: 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62
Query: 421 APEEKARGITINVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDG 597
E+ RGITI++A +++T + + D PGH D+IKNMITGT+Q D A+LVVA G
Sbjct: 63 LKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTG 121
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 72.9 bits (171), Expect = 2e-13
Identities = 44/115 (38%), Positives = 63/115 (54%), Gaps = 15/115 (13%)
Frame = +1
Query: 286 RTKPHCNVGTIGHVDHGKTTLTAAITKVLSDLNL---------AQKKGYSD------IDN 420
+ K H N+ IGHVD GK+T T + ++ AQ+ G +D
Sbjct: 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62
Query: 421 APEEKARGITINVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVA 585
E+ RGITI++A +++T + + D PGH D+IKNMITGT+Q D A+LVVA
Sbjct: 63 LKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 71.7 bits (168), Expect = 4e-13
Identities = 42/113 (37%), Positives = 60/113 (53%), Gaps = 15/113 (13%)
Frame = +1
Query: 304 NVGTIGHVDHGKTTLTAAITKVLSDLNL---------AQKKGYSD------IDNAPEEKA 438
N+ +GHVD GK+TL + L ++ A + G + +D EE+
Sbjct: 172 NLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDETEEERE 231
Query: 439 RGITINVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDG 597
RG+T+++ ++T R D PGH D+I NMITGT+Q D AILVV AT G
Sbjct: 232 RGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTG 284
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 71.7 bits (168), Expect = 4e-13
Identities = 42/113 (37%), Positives = 60/113 (53%), Gaps = 15/113 (13%)
Frame = +1
Query: 304 NVGTIGHVDHGKTTLTAAITKVLSDLNL---------AQKKGYSD------IDNAPEEKA 438
N+ +GHVD GK+TL + L ++ A + G + +D EE+
Sbjct: 190 NLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDETEEERE 249
Query: 439 RGITINVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDG 597
RG+T+++ ++T R D PGH D+I NMITGT+Q D AILVV AT G
Sbjct: 250 RGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTG 302
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 67.7 bits (158), Expect = 6e-12
Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 15/117 (12%)
Frame = +1
Query: 292 KPHCNVGTIGHVDHGKTTLTAAI---TKVLSDLNL------AQKKGYSD------IDNAP 426
K H N+ +GHVD GK+T+ + T ++ L A++KG +D
Sbjct: 107 KEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMDTND 166
Query: 427 EEKARGITINVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDG 597
EE+ +G T+ V ++TE+RH+ D PGH ++ NMI G Q D A+LV++A G
Sbjct: 167 EEREKGKTVEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRG 223
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 60.9 bits (141), Expect = 7e-10
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Frame = +1
Query: 304 NVGTIGHVDHGKTTLTAAITKVLSDLNLAQK--KGYSDIDNAPEEKARGITINVAHVEYQ 477
N+G I HVD GKTT+T + + +++A KG + D E+ RGIT+ A V
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAIHVAGHVDKGNTVTDFLDIERERGITVQSAAVNLD 86
Query: 478 TEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQ 609
+ D PGH D+ + +DG ++V+ + GV PQ
Sbjct: 87 WKGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDGSAGVQPQ 130
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 58.4 bits (135), Expect = 4e-09
Identities = 33/102 (32%), Positives = 48/102 (47%)
Frame = +1
Query: 304 NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYSDIDNAPEEKARGITINVAHVEYQTE 483
N G + HVDHGK+TL + ++ + QK+ +D E+ RGIT+ +
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQM---LDKLQVERERGITVKAQTAALRHR 100
Query: 484 QRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQ 609
D PGH D+ + A DG +L+VAA GV Q
Sbjct: 101 GYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQGVQAQ 142
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 54.0 bits (124), Expect = 8e-08
Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
Frame = +1
Query: 304 NVGTIGHVDHGKTTLTAAITKVLSDLN-LAQKKGYSDI----DNAPEEKARGITINVAHV 468
N+G H+D GKTT+T I ++ + + +G D+ D E+ RGITI A
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRIDSMHEVRGKDDVGATMDFMDLERQRGITIQSAAT 105
Query: 469 EYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQ 609
+ D PGH D+ + +DGA+LV+ GV Q
Sbjct: 106 YVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCGVGGVQSQ 152
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 51.2 bits (117), Expect = 6e-07
Identities = 26/102 (25%), Positives = 48/102 (47%)
Frame = +1
Query: 304 NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYSDIDNAPEEKARGITINVAHVEYQTE 483
NV + HVDHGKT+ ++ + ++ +D+ +E+ RGIT+ + + E
Sbjct: 22 NVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTRGITMKSSGISLLCE 81
Query: 484 QRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQ 609
D PGH D+ + + D A+L++ +G+ Q
Sbjct: 82 PLLINLIDSPGHVDFSGEVTSALILSDIALLLIDVIEGICSQ 123
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 51.2 bits (117), Expect = 6e-07
Identities = 26/102 (25%), Positives = 48/102 (47%)
Frame = +1
Query: 304 NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYSDIDNAPEEKARGITINVAHVEYQTE 483
NV + HVDHGKT+ ++ + ++ +D+ +E+ RGIT+ + + E
Sbjct: 22 NVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTRGITMKSSGISLLCE 81
Query: 484 QRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQ 609
D PGH D+ + + D A+L++ +G+ Q
Sbjct: 82 PLLINLIDSPGHVDFSGEVTSALILSDIALLLIDVIEGICSQ 123
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 50.0 bits (114), Expect = 1e-06
Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Frame = +1
Query: 304 NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYSDID-NAPEEKARGITINVAHVEYQT 480
N+G +GHVD GKTTLT I ++ S S D +A GI N + + T
Sbjct: 15 NLGILGHVDSGKTTLTRRIAELGST---------SAFDAHATSTTTDGIRRNTLDLGFST 65
Query: 481 ----EQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQ 609
R DCPGH+ I+ ++ + D AI+++ G+ PQ
Sbjct: 66 MTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQ 112
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 44.8 bits (101), Expect = 5e-05
Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 24/121 (19%)
Frame = +1
Query: 304 NVGTIGHVDHGKTTLTAAITKVLS-------DLNLAQKKGYSDI-------DNAPEEKAR 441
N+GTIGHV HGK+TL A + V + + N+ K GY++ P
Sbjct: 42 NIGTIGHVAHGKSTLVKAFSGVHTVKFKRELERNITIKLGYANAKIYRCSNQECPRPGCY 101
Query: 442 GITINVAHVEYQTEQ----------RHYGHTDCPGHADYIKNMITGTAQMDGAILVVAAT 591
+ + E+ RH DCPGH + M+ G A MD A L+VA
Sbjct: 102 RSAGSSTPDRFPCERAGCGGEFTCVRHVSFVDCPGHDILMATMLNGAAVMDAAFLLVAGN 161
Query: 592 D 594
+
Sbjct: 162 E 162
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 43.2 bits (97), Expect = 2e-04
Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
Frame = +1
Query: 295 PHC--NVGTIGHVDHGKTT-LTAAITKVLSDLNLAQKKGYSDIDNAPEEKARGITIN--- 456
PH NV GH+ HGKTT L + + + A+ D EK RG +I
Sbjct: 129 PHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRGCSIKSQP 188
Query: 457 VAHVEYQTEQRHY--GHTDCPGHADYIKNMITGTAQMDGAILVVAATDGVM 603
V+ V + + Y D PGH ++ M DG +++V A +GVM
Sbjct: 189 VSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEGVM 239
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 43.2 bits (97), Expect = 2e-04
Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
Frame = +1
Query: 295 PHC--NVGTIGHVDHGKTT-LTAAITKVLSDLNLAQKKGYSDIDNAPEEKARGITIN--- 456
PH NV GH+ HGKTT L + + + A+ D EK RG +I
Sbjct: 4 PHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRGCSIKSQP 63
Query: 457 VAHVEYQTEQRHY--GHTDCPGHADYIKNMITGTAQMDGAILVVAATDGVM 603
V+ V + + Y D PGH ++ M DG +++V A +GVM
Sbjct: 64 VSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEGVM 114
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 41.9 bits (94), Expect = 3e-04
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Frame = +1
Query: 304 NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYSDIDNAPEEKARGITINVAHVEYQT- 480
N+G +GHVD GKTTLT I + L + +A GI N + + T
Sbjct: 15 NLGILGHVDSGKTTLTRRIAE------LGSTSAFD--AHATSTTTDGIRRNTLDLGFSTM 66
Query: 481 ---EQRHYGHTDCPGHADYIKNMITGTAQMDGAILV 579
R DCPGH+ I+ ++ + D AI++
Sbjct: 67 TSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVI 102
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 40.7 bits (91), Expect = 8e-04
Identities = 38/115 (33%), Positives = 48/115 (41%)
Frame = +1
Query: 265 AEKQVFERTKPHCNVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYSDIDNAPEEKARG 444
A + ER P + +GHVDHGKTTL A+ S + + G +
Sbjct: 147 ASPKDLERRPPIVTI--MGHVDHGKTTLLDAMRN--SQIAAGEFGGITQ----------- 191
Query: 445 ITINVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQ 609
I VE T+ R D PGHA + G D +LVVAA DGV Q
Sbjct: 192 -HIGAFSVEL-TKGRRVTFLDTPGHAAFASMRARGAKGADIVVLVVAADDGVKEQ 244
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 36.3 bits (80), Expect = 0.017
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Frame = +1
Query: 316 IGHVDHGKTTLTAAITKVLSDLNLAQKKGYSDIDNAPEEKARGITINVAHVE--YQTEQR 489
+GHVD GKT + I + +++ + G + A E A I V Q + +
Sbjct: 490 LGHVDTGKTKMLDTIRR--TNVQQGEAGGITQQIGATEVPAEAIKERCRQVRGFLQDQMK 547
Query: 490 HYGHT--DCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQ 609
G D PGH + G++ D AILVV G+ PQ
Sbjct: 548 IPGFLIIDTPGHESFSNLRTRGSSLCDFAILVVDIMHGLEPQ 589
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 33.5 bits (73), Expect = 0.12
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 271 KQVFERTKPHCNVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYSDI-DNAPEEKARGI 447
+ + +R + N+ I HVDHGK+TLT ++ + + K G + D +E+ R I
Sbjct: 10 RALMDRKRNIRNMSVIAHVDHGKSTLTDSLVS-KAGIIAGSKAGETRFTDTRKDEQERCI 68
Query: 448 TI 453
TI
Sbjct: 69 TI 70
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 505 DCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQ 609
D PGH D+ + DGA++VV GV Q
Sbjct: 116 DSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQ 150
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 33.5 bits (73), Expect = 0.12
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 271 KQVFERTKPHCNVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYSDI-DNAPEEKARGI 447
+ + +R + N+ I HVDHGK+TLT ++ + + K G + D +E+ R I
Sbjct: 10 RALMDRKRNIRNMSVIAHVDHGKSTLTDSLVS-KAGIIAGSKAGETRFTDTRKDEQERCI 68
Query: 448 TI 453
TI
Sbjct: 69 TI 70
Score = 30.7 bits (66), Expect = 0.86
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 505 DCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQ 609
D PGH D+ + DGA++VV GV Q
Sbjct: 116 DSPGHVDFSSEVTAALGVTDGALVVVDCVSGVCVQ 150
>Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical protein
F21G4.2 protein.
Length = 1573
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 259 NYAEKQVFERTKPHCNVGTIGHVDHGKTTLTAAITKVL 372
N KQ+ KPH VG +G GK+++T ++ +++
Sbjct: 1348 NLVVKQLNVEIKPHEKVGIVGRTGAGKSSVTLSLFRII 1385
>Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical
protein F21G4.2 protein.
Length = 1573
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 259 NYAEKQVFERTKPHCNVGTIGHVDHGKTTLTAAITKVL 372
N KQ+ KPH VG +G GK+++T ++ +++
Sbjct: 1348 NLVVKQLNVEIKPHEKVGIVGRTGAGKSSVTLSLFRII 1385
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 286 RTKPHCNVGTIGHVDHGKTTLT 351
+ K H N+ IGHVD GK+T T
Sbjct: 3 KEKVHINIVVIGHVDSGKSTTT 24
>Z81519-2|CAB04217.1| 468|Caenorhabditis elegans Hypothetical
protein F29C12.5 protein.
Length = 468
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +1
Query: 250 LRRNYAEKQVFERTKPHC--NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYSDI 414
+R + AEK+ + K HC VGT ++ + L + I K K +SD+
Sbjct: 250 IRLDIAEKECLQNLKKHCLSKVGTADQIEAARAILPSDIPKRALKKFDESNKEFSDV 306
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,200,974
Number of Sequences: 27780
Number of extensions: 290352
Number of successful extensions: 708
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -