Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_L16
         (611 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    75   4e-16
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    74   1e-15
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    66   3e-13
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    52   4e-09
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    42   5e-06
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    36   2e-04
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   3.1  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   4.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.1  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   7.2  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   7.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.5  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 75.4 bits (177), Expect = 4e-16
 Identities = 45/119 (37%), Positives = 65/119 (54%), Gaps = 15/119 (12%)
 Frame = +1

Query: 286 RTKPHCNVGTIGHVDHGKTTLTAAITKVLSDLNL---------AQKKGYSD------IDN 420
           + K H N+  IGHVD GK+T T  +      ++          AQ+ G         +D 
Sbjct: 3   KEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62

Query: 421 APEEKARGITINVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDG 597
              E+ RGITI++A  +++T + +    D PGH D+IKNMITGT+Q D A+L+VAA  G
Sbjct: 63  LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 121


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 74.1 bits (174), Expect = 1e-15
 Identities = 45/119 (37%), Positives = 65/119 (54%), Gaps = 15/119 (12%)
 Frame = +1

Query: 286 RTKPHCNVGTIGHVDHGKTTLTAAITKVLSDLNL---------AQKKGYSD------IDN 420
           + K H N+  IGHVD GK+T T  +      ++          AQ+ G         +D 
Sbjct: 3   KEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62

Query: 421 APEEKARGITINVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDG 597
              E+ RGITI++A  +++T + +    D PGH D+IKNMITGT+Q D A+L+VAA  G
Sbjct: 63  LKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGIG 121


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 66.1 bits (154), Expect = 3e-13
 Identities = 30/62 (48%), Positives = 43/62 (69%)
 Frame = +1

Query: 412 IDNAPEEKARGITINVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAAT 591
           +D    E+ RGITI++A  +++T + +    D PGH D+IKNMITGT+Q D A+L+VAA 
Sbjct: 3   LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 62

Query: 592 DG 597
            G
Sbjct: 63  TG 64


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 52.0 bits (119), Expect = 4e-09
 Identities = 23/48 (47%), Positives = 34/48 (70%)
 Frame = +1

Query: 454 NVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDG 597
           ++A  +++T + +    D PGH D+IKNMITGT+Q D A+L+VAA  G
Sbjct: 1   DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 48


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 41.9 bits (94), Expect = 5e-06
 Identities = 38/106 (35%), Positives = 48/106 (45%)
 Frame = +1

Query: 292 KPHCNVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYSDIDNAPEEKARGITINVAHVE 471
           K H  V  +GHVDHGKTTL  A    L + ++A K  +  I            I    V 
Sbjct: 143 KRHPIVTIMGHVDHGKTTLLDA----LRNTSIA-KSEFGGITQC---------IGAFDVT 188

Query: 472 YQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQ 609
            ++ +R     D PGHA +I     G    D  +LVVAA DGV  Q
Sbjct: 189 LESGER-VTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDGVKEQ 233


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 36.3 bits (80), Expect = 2e-04
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +1

Query: 304 NVGTIGHVDHGKTTLTAAITKV--LSDLNLAQKKGYSDIDNAPEEKARG 444
           N+GTIGHV HGK+T+  AI+ V  +   N  ++     +D   E+  RG
Sbjct: 44  NIGTIGHVAHGKSTIVKAISGVQTVRFKNELERNITIKLDTRAEDSTRG 92


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/28 (25%), Positives = 16/28 (57%)
 Frame = -1

Query: 125 IMLHTLRWELQLMFSLKYVFFILFNILC 42
           ++ +  +WE     ++  VF  +FN++C
Sbjct: 225 LVRYVSQWEEVYFLNMASVFMRIFNLIC 252


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = +1

Query: 91  SCNSHRKV*SIMTSISFVKSLVNPAVKLVLKQSQCSHIRNTTVLPTLTPLSC 246
           +C+SH     I     F    V+P+    L  ++   +  T V+P L P  C
Sbjct: 119 TCSSHPTAAFISYGTLFF-IYVHPSATFSLDLNKVVSVFYTAVIPMLNPFIC 169


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 146 KVWLTQLLNWCLNKA 190
           +VWLT LL W ++ A
Sbjct: 302 RVWLTILLVWAISAA 316


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = -1

Query: 212 VFLIWLHWLCLSTNLTAGLTKLFTNDMEVIMLHTLRWELQ 93
           + +IWL  LCL+         ++ N    ++L T R  ++
Sbjct: 175 IIVIWLLALCLAVPQAIQFGVVYENKNGSVILDTARCSMK 214


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = -1

Query: 212 VFLIWLHWLCLSTNLTAGLT 153
           +F++W  WL  ++  T G++
Sbjct: 228 LFVLWWGWLAFNSGSTYGVS 247


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 490 HYGHTDCPGHAD 525
           HYGH   PG  D
Sbjct: 280 HYGHHPDPGEVD 291


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,474
Number of Sequences: 438
Number of extensions: 3411
Number of successful extensions: 18
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)