Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_L15
(595 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 331 5e-92
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 194 8e-51
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 183 2e-47
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 137 1e-33
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 103 2e-23
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 97 2e-21
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 89 5e-19
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 52 8e-08
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 36 0.006
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.073
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.13
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 3.6
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 26 3.6
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 26 3.6
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|... 25 8.3
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||... 25 8.3
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 25 8.3
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 8.3
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 331 bits (813), Expect = 5e-92
Identities = 151/161 (93%), Positives = 156/161 (96%)
Frame = +1
Query: 112 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 291
AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSKRGIL
Sbjct: 6 AALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSKRGIL 65
Query: 292 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 471
TLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQI+FE
Sbjct: 66 TLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQIIFE 125
Query: 472 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIY 594
TFN PA YVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIY
Sbjct: 126 TFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIY 166
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 194 bits (473), Expect = 8e-51
Identities = 87/160 (54%), Positives = 118/160 (73%), Gaps = 1/160 (0%)
Frame = +1
Query: 118 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 297
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 298 KYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 474
+ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE PL N+EK+ + +ET
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYET 131
Query: 475 FNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIY 594
N PA+ ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY
Sbjct: 132 LNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIY 171
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 183 bits (446), Expect = 2e-47
Identities = 84/164 (51%), Positives = 120/164 (73%), Gaps = 2/164 (1%)
Frame = +1
Query: 109 SAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKR 282
SA +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++ R
Sbjct: 3 SAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVR 62
Query: 283 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 462
+L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM +
Sbjct: 63 SLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCET 122
Query: 463 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIY 594
MFE + +YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+Y
Sbjct: 123 MFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVY 166
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 137 bits (331), Expect = 1e-33
Identities = 77/190 (40%), Positives = 107/190 (56%), Gaps = 32/190 (16%)
Frame = +1
Query: 118 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 246
+++DNG+G K G+AG+DAP VFP+++ R G G M K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 247 ------DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 405
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126
Query: 406 LLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDS 561
LLTE PLNP NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DS
Sbjct: 127 LLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDS 186
Query: 562 GDGVSHTVPI 591
GDGV+H +P+
Sbjct: 187 GDGVTHIIPV 196
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 103 bits (247), Expect = 2e-23
Identities = 53/161 (32%), Positives = 95/161 (59%), Gaps = 3/161 (1%)
Frame = +1
Query: 118 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 297
LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG++ + G ++
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSI 82
Query: 298 -KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 474
+ P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFEL 141
Query: 475 FNTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTVPI 591
+N P++ I + S Y + + ++GIVL+ G+ SH +P+
Sbjct: 142 YNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPV 182
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 97.1 bits (231), Expect = 2e-21
Identities = 56/161 (34%), Positives = 84/161 (52%)
Frame = +1
Query: 112 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 291
+A+V+D GS + GF+G+D P+ V PS G + G + Y+ +S G +
Sbjct: 12 SAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNPG-M 63
Query: 292 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 471
+K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MFE
Sbjct: 64 EIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMFE 123
Query: 472 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIY 594
+ PA Y+A Q + +ASG+ T ++D G S IY
Sbjct: 124 SLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIY 164
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 89.0 bits (211), Expect = 5e-19
Identities = 46/161 (28%), Positives = 87/161 (54%), Gaps = 2/161 (1%)
Frame = +1
Query: 115 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI-- 288
+LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q I
Sbjct: 12 SLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHAPIPG 65
Query: 289 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 468
+ +K +GI+ +W+ W +L+V P E+ +++TE NP++ R+++ + F
Sbjct: 66 MEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAF 125
Query: 469 ETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 591
E + PA Y+ QAV +A+ ++T +++D G + P+
Sbjct: 126 EQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPV 166
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 51.6 bits (118), Expect = 8e-08
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Frame = +1
Query: 304 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 471
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 472 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 591
P +A + ++ LYA G G+V+D G + PI
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPI 211
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 35.5 bits (78), Expect = 0.006
Identities = 41/176 (23%), Positives = 71/176 (40%), Gaps = 18/176 (10%)
Frame = +1
Query: 118 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 297
+V+DNG+ KAGFAG P+ + R + G + ++G+E + TL
Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSKD-------GNR-LFLGNELANCNDFTTL 57
Query: 298 KYPIEH--GIVTNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMTQIM 465
++ H G + +W +W N + P ++ +LLT+ + Q++
Sbjct: 58 QFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQLV 117
Query: 466 FETFNTPAMYVAIQAVLSLYASGRTT--------------GIVLDSGDGVSHTVPI 591
FE F A A L + G T +V+DSG +H +P+
Sbjct: 118 FEEFQFDAYLPCTPAELIPWDHGSFTMNQEDAYTGQHGECVLVIDSGYSFTHIIPV 173
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.073
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +1
Query: 364 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 507
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.13
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 163 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 306
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 406 LLTEAPLNPKANREKMTQIMFETFN 480
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = -3
Query: 566 SPESST-IPVVRPDAYSESTAWIATYMAGVLKVSNIICVIFS 444
+P+S+ + +V D S+S Y+A +K +N+IC+++S
Sbjct: 44 NPDSNDDVSLVLVDTQSDSNE--REYLAAEIKKANVICLVYS 83
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 359 TPSTMSCV*LPRSTQSCSPKLPSTPKPTE 445
TPS S P S+ + SP PSTP T+
Sbjct: 405 TPSKPSTFVRPHSSSTDSPPSPSTPSNTQ 433
>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 712
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +3
Query: 285 YPHTQIPHRTRHRHQLGRYGEDLASHLLQ*AACSSRG 395
Y + + PH+ +H LG YG ++ L C +G
Sbjct: 307 YGNPEHPHQRKHAFDLGEYGAGYLTNPLA-LGCDCKG 342
>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -1
Query: 400 GAPRELHAAHCRRCDARSSP 341
G PRE HCR C+ P
Sbjct: 52 GIPRESTVNHCRECERYMQP 71
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.0 bits (52), Expect = 8.3
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -3
Query: 587 GTVWDTPSPESSTIPVVRPDAYSESTAWIATYMAGVLKVSNIICVIFSLLAL 432
G+ PS IP++ P+ S + I ++ L VS I FS+L +
Sbjct: 493 GSTKTLPSIGKKPIPLLDPNPISSTPISITFWVIMFLSVSFTIVTFFSILRI 544
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 223 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 309
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,673,332
Number of Sequences: 5004
Number of extensions: 59305
Number of successful extensions: 177
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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