Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_L14
(474 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 31 0.12
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 29 0.27
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ... 27 1.5
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 1.5
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 27 1.9
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 26 2.5
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 26 2.5
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom... 26 2.5
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 3.4
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ... 25 4.5
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 25 4.5
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 25 4.5
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 25 5.9
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 25 5.9
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 25 5.9
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 25 5.9
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 25 5.9
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon... 25 5.9
SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 25 5.9
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 25 5.9
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 25 7.8
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc... 25 7.8
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 25 7.8
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 30.7 bits (66), Expect = 0.12
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 84 ASLEQYKTLIRQQ-DSRLQELMMQLEGLVQQNNSLQSTLNDSISANSHLKDEN 239
A+ Y ++R+ + + L+ + L+ N++Q LN+S+ A+ HL +N
Sbjct: 529 AAANAYMAMLRESYGTEINNLLERRNELLDDYNNVQKILNESLEASVHLNTKN 581
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 29.5 bits (63), Expect = 0.27
Identities = 19/87 (21%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Frame = +3
Query: 84 ASLEQYKTLIRQQDSRLQELMMQLEGLVQQNNSLQSTLNDSISANSHLKDENTLLKAQVS 263
A L++ I + +QE+ + + + +++ + +L++S+ L+ EN+ L + VS
Sbjct: 992 AELDKLTKYISDYKTEIQEMRLTNQKMNEKSIQQEGSLSESLKRVKKLERENSTLISDVS 1051
Query: 264 ATKSSPVQNSL--NLDETKIREYEAKI 338
K + S+ + E I E K+
Sbjct: 1052 ILKQQKEELSVLKGVQELTINNLEEKV 1078
>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 621
Score = 27.1 bits (57), Expect = 1.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 334 KLENMRRKSENMRSKSESTRKKTIEYEFKVQNLTVEVARLNE 459
K+E R+ E ST I+YE +++ L +AR+ E
Sbjct: 234 KVETAARRVERFTEVLMSTHDMKIDYESRMKRLLGSIARMQE 275
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.1 bits (57), Expect = 1.5
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = +3
Query: 102 KTLIRQQDSRLQELMMQLEGLVQQNNSLQSTL-----NDSISANSHLKDENTLLKAQVSA 266
KT I + + EL EGLVQQ +L + L + + DE L++Q+ +
Sbjct: 1520 KTEISNLEKEIHELRSDKEGLVQQVQNLSAELAALREHSPTQGSLENADEIARLRSQLES 1579
Query: 267 TK 272
TK
Sbjct: 1580 TK 1581
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 26.6 bits (56), Expect = 1.9
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +3
Query: 84 ASLEQYKTLIRQQDSRLQELMMQLEGLVQQNNSLQSTLNDSISANSHLKDENTL 245
+ + +LI Q+ L++ + + L ++ NSL+S + S LKD+ T+
Sbjct: 137 SEISNQNSLILQKKDELEKSIQRCSELEEKINSLESAQSIEQEVISSLKDDKTV 190
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 26.2 bits (55), Expect = 2.5
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 337 LENMRRKSENMRSK-SESTRKKTIEYEFKVQNLTVEVARLNEQV 465
L++ +N+ SK SES + T+ Y F + +L + +L ++
Sbjct: 134 LQDTLETEKNLNSKTSESLKSPTLSYPFDLDSLDKRIFKLESKI 177
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 26.2 bits (55), Expect = 2.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 307 RRRSENMRRKLENMRRKSENMRSKSESTRK 396
+ + EN+RRK EN +R+ + + S+ K
Sbjct: 344 KEQDENVRRKRENKKRRKDQKKEGITSSNK 373
>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 26.2 bits (55), Expect = 2.5
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Frame = +3
Query: 108 LIRQQDSRLQELMMQLEGLVQQNNSLQSTLN-DSISANSHLKDENTLLKAQVSATK-SSP 281
L R ++ L++ GL++ N+ + + D I +N L ++NTLL QVS + +S
Sbjct: 120 LRRTTPLKIGPLLLTRIGLLKSKNTASNNYSVDHIVSN--LANDNTLLNRQVSTEEWNSH 177
Query: 282 VQNSLNL 302
+++ LN+
Sbjct: 178 LRHLLNI 184
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 3.4
Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Frame = +3
Query: 9 LVQSLTAKQENGVAEGAPERAGPDGASLEQYKTLIRQQDSRLQELMMQLE---GLVQQNN 179
L++ + +NG + + + +LE +KT + L L +L G ++
Sbjct: 487 LLEYFVTEPDNGKIQKSMQLLTHTLEALEGFKTAKADTNVGLTILSQRLLDKLGTAEEIA 546
Query: 180 SLQSTLNDSISANSHLKDENTLLKAQVSATKSSPVQ-NSLNLDETK 314
++ N ++ N HLK++ + +Q++ P+Q LDE K
Sbjct: 547 EYKTKYNGAMLENKHLKEQVESMLSQLNVGPRDPMQFLKKQLDELK 592
>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 25.4 bits (53), Expect = 4.5
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 231 DENTLLKAQVSATKSSPVQNSLNLDETKIREYEAKI 338
D+ L + +V S PVQ + N+D T+I E + +
Sbjct: 331 DQKELDRVEVYGALSQPVQLNKNIDVTEILEKDPSL 366
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 25.4 bits (53), Expect = 4.5
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 373 SKSESTRKKTIEYEFKVQNLTVEVARLNEQV 465
SK EST+ IE +FK +N V +++ +V
Sbjct: 766 SKEESTKTAVIEAKFKNKNPMTRVEKIHLEV 796
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.4 bits (53), Expect = 4.5
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = -2
Query: 467 FTCSFNLATSTVRFCTLNSYSIVFFLVLSDFDLIFSDFRLIFSNFRLIFSDLR 309
+ CS A S R C + I+ + +D L F D L + F IFS LR
Sbjct: 722 YLCSIYWAGS--RLCFVQPRIILGIMYFTDLILFFLDTYLWYIIFNTIFSVLR 772
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 25.0 bits (52), Expect = 5.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 116 PDQRLVLFERGAVRAGSLRSPLC 48
PD ++ +F+ G RAG PLC
Sbjct: 27 PDSKIRIFDLGRKRAGVDEFPLC 49
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 25.0 bits (52), Expect = 5.9
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +3
Query: 84 ASLEQYKTLIRQQDSRLQELMMQLEGLVQQNNSLQSTL 197
A L Q + L + ++ +LQE + + E L+ + N + STL
Sbjct: 638 AQLSQLENL-QNEERKLQEKVNEHESLLSRTNDILSTL 674
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 25.0 bits (52), Expect = 5.9
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +3
Query: 90 LEQYKTLIRQQDSRLQELMMQLEGLVQQNNSLQSTLNDSI 209
L QY +R ++ L + + L+ + QN+ L +L + I
Sbjct: 435 LNQYDARVRTLENELSQAGVNLQEQIHQNDDLIESLKNQI 474
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 25.0 bits (52), Expect = 5.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 116 PDQRLVLFERGAVRAGSLRSPLC 48
PD ++ +F+ G RAG PLC
Sbjct: 27 PDSKIRIFDLGRKRAGVDEFPLC 49
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 25.0 bits (52), Expect = 5.9
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +1
Query: 307 RRRSENMRRKLENMRRKSENMRSKSESTRKK 399
+RR EN++++ E+ + K K + ++KK
Sbjct: 203 QRREENLKKRRESKKSKKGKAPKKKKPSKKK 233
>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 25.0 bits (52), Expect = 5.9
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +3
Query: 117 QQDSRLQELMMQLEGLVQQNNSLQSTLNDSISANSHLKDENTLLKAQVSATK-SSPVQNS 293
++DS + M+ GL++ N L L+DS S+ + E + SA + S+ NS
Sbjct: 449 EEDSDDEGEFMEASGLIESTNELH--LSDSESSETSSSSEEDMEFIPFSARRDSANTINS 506
Query: 294 LNLDE 308
+ DE
Sbjct: 507 EDFDE 511
>SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 335
Score = 25.0 bits (52), Expect = 5.9
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 165 VQQNNSLQSTLNDSISANSHLKDENTLLKAQVSATKSSPVQN 290
++ N+S Q +N S ++HL+ LL + +SP N
Sbjct: 199 LRDNDSFQFGMNTDASGDAHLQASEFLLPNLFGNSSTSPQDN 240
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 25.0 bits (52), Expect = 5.9
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 343 NMRRKSENMRSKSESTRKKTIEYEFKVQNLTVEVARLNEQVKS 471
N+R +E + + K Y+ KVQ L E A L +Q ++
Sbjct: 1001 NIRELNEKLMRLDDELLLKQRSYDTKVQELREENASLKDQCRT 1043
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 24.6 bits (51), Expect = 7.8
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +1
Query: 313 RSENMRRKLENMRRKSENMRSKSESTRKKTIE 408
+ E RRK E + K E K + +KK E
Sbjct: 443 KKEEKRRKKEAKKEKKEKKEKKEKKEKKKKSE 474
>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 24.6 bits (51), Expect = 7.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 386 LSDFDLIFSDFRLIFSNFRLIFSDL 312
L ++D DFRLI++N SDL
Sbjct: 422 LEEYDSFLQDFRLIWANTGDYISDL 446
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 24.6 bits (51), Expect = 7.8
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 111 IRQQDSRLQELMMQLEGLVQQNNSLQSTLNDSISANSHLKD 233
I Q SRL++++ G + SLQ L S HL+D
Sbjct: 754 IEQWQSRLRKILHLFSGRNEDIASLQCVLQFGSSERIHLED 794
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,408,280
Number of Sequences: 5004
Number of extensions: 22396
Number of successful extensions: 157
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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