Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_L13
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    27   1.8  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    27   2.4  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    26   4.2  
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    25   7.3  

>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 119 SALVPAYVQRGPSVRRYVRTDARLREVTVDP 27
           + +VP  +Q G S+ R  +   R R+V++DP
Sbjct: 158 ATIVPESIQNGCSLLRITKKKVRQRKVSLDP 188


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -3

Query: 200 HRCLADHDVLDAAGEPSPGPDAAHLVYSALVPAY 99
           H  L+    +  +G  SP PD A L YS+    Y
Sbjct: 329 HSALSPSKPMSISGTESPNPDPASLCYSSYEDLY 362


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +3

Query: 375 ASYLDTRLKARTKLLLCEKNVWKSKGFK*ANRNNTEYYRSFRVGHS 512
           ++Y DT +  R    + ++  W +  F  A      YYR FR  H+
Sbjct: 484 SAYADTDVPDRIPEFVLQRRRWLNGSFFAAAYAICHYYRFFRTSHT 529


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 370 SVERNKMTTNIYLYACYVTFIL*LQWIM 287
           S+   +    IY   C++ FIL + W M
Sbjct: 320 SINHKRFPMFIYAIGCFINFILRVTWSM 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,012,034
Number of Sequences: 5004
Number of extensions: 38556
Number of successful extensions: 82
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)