Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_L13
(550 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1145 + 9073973-9074281,9075440-9075998,9076088-9076241,907... 29 2.4
02_05_0833 + 32080845-32081118,32081483-32081663,32081825-320819... 29 3.2
12_02_1170 - 26663491-26663602,26663999-26664104,26664613-266648... 28 4.3
12_02_0557 + 20441067-20441397,20441415-20442340 28 4.3
10_08_0032 - 14288522-14290465 28 5.6
07_03_1706 + 28855669-28855801,28856013-28856044,28856158-288562... 28 5.6
02_02_0286 - 8589736-8590857 28 5.6
09_06_0323 - 22337217-22337450,22338263-22339204 27 7.5
09_04_0757 - 19963832-19964866 27 7.5
02_04_0437 - 22938263-22938273,22938345-22938444,22938727-229389... 27 9.9
>01_01_1145 +
9073973-9074281,9075440-9075998,9076088-9076241,
9077475-9077565,9077722-9077793,9077879-9078390,
9078854-9078923,9079514-9079579,9080266-9080570,
9080872-9081006,9081141-9081204,9081429-9081574,
9081669-9081773,9082310-9082490
Length = 922
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Frame = -3
Query: 230 VPAGGGRRYLHRCLAD--HDVLDAAGEPSPGPDAAHLVYSALVPAYVQRGP 84
VP G G R R +A H + G P PGP Y VP RGP
Sbjct: 260 VPQGAGPRAFMRPMAHLPHTLGYINGPPYPGPMPPMYYYMPAVPMEPMRGP 310
>02_05_0833 +
32080845-32081118,32081483-32081663,32081825-32081999,
32082088-32082220,32082303-32082373,32082738-32082821,
32083106-32083196,32083315-32083835,32083932-32084096,
32084181-32084399,32084859-32084986,32085104-32085293,
32085478-32085561,32085643-32085740,32086127-32086391,
32086511-32086673,32086792-32086972,32087299-32087370,
32087473-32087614
Length = 1078
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 215 GRRYLHRCLADHDVLDAAGEPSP 147
GRR LHRC V+ AAG +P
Sbjct: 11 GRRLLHRCRRPRPVVQAAGPSAP 33
>12_02_1170 -
26663491-26663602,26663999-26664104,26664613-26664816,
26664914-26665076,26665196-26665317,26665702-26665969
Length = 324
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/47 (29%), Positives = 18/47 (38%)
Frame = -3
Query: 245 DADVRVPAGGGRRYLHRCLADHDVLDAAGEPSPGPDAAHLVYSALVP 105
D V P GG + R +A +LD G P D Y +P
Sbjct: 201 DTSVLYPTTGGNMHRFRAIAPCAILDILGPPYSTEDGRDCTYYRAIP 247
>12_02_0557 + 20441067-20441397,20441415-20442340
Length = 418
Score = 28.3 bits (60), Expect = 4.3
Identities = 18/46 (39%), Positives = 20/46 (43%)
Frame = -3
Query: 242 ADVRVPAGGGRRYLHRCLADHDVLDAAGEPSPGPDAAHLVYSALVP 105
A V VPA G R L H VLDA G HL+ S+ P
Sbjct: 227 ATVSVPATGAFRALTDFTLHHAVLDAGGGDDDDLRLGHLLSSSCCP 272
>10_08_0032 - 14288522-14290465
Length = 647
Score = 27.9 bits (59), Expect = 5.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 105 GHERAIHKMRGVRSRRGFTGCIKNIMIGE 191
GH+ H+ RGV RR + G ++++ G+
Sbjct: 275 GHDLREHRRRGVSPRRFYEGLLRHLPFGD 303
>07_03_1706 +
28855669-28855801,28856013-28856044,28856158-28856229,
28856631-28856727,28857195-28857256,28857726-28858024,
28858306-28858663,28858692-28859297,28859500-28859698,
28860039-28860101,28860603-28860673
Length = 663
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = -3
Query: 119 SALVPAYVQRGPSVRRYVRTDARLREVTVDPHGHHVQ 9
S LVP S YV TD R R+ V P HHV+
Sbjct: 30 SLLVPLAFLFDRSQSGYVTTDERRRQEVVLPEFHHVE 66
>02_02_0286 - 8589736-8590857
Length = 373
Score = 27.9 bits (59), Expect = 5.6
Identities = 18/43 (41%), Positives = 19/43 (44%)
Frame = -3
Query: 230 VPAGGGRRYLHRCLADHDVLDAAGEPSPGPDAAHLVYSALVPA 102
VP GGG R R A AA P+P AA V AL A
Sbjct: 88 VPVGGGCRKSKRSSASSASASAASPPAPAVGAAPPVVPALSSA 130
>09_06_0323 - 22337217-22337450,22338263-22339204
Length = 391
Score = 27.5 bits (58), Expect = 7.5
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +3
Query: 51 PGIGT-NISTDTRSALYIGGHERAIHKMRGVRSRRGFTGCIKNIMIGETPVQIPATAA 221
P G+ + +T RSA+ + + +HK RG RS G + I T + PA +
Sbjct: 84 PAAGSASAATPRRSAVALASSPQFLHKKRGTRSFVTEAGTVVAIYWDTTDAKYPAAGS 141
>09_04_0757 - 19963832-19964866
Length = 344
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 80 VRRYVRTDARLREVTVDPHGHH 15
VRR V AR++ +TV PHG H
Sbjct: 309 VRRAVTLFARVKGLTVRPHGQH 330
>02_04_0437 -
22938263-22938273,22938345-22938444,22938727-22938908,
22938989-22939092,22939792-22939857,22940032-22940105,
22940241-22940309,22940902-22941028,22941740-22942971,
22943163-22943486,22943500-22943793
Length = 860
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 30 VDGHFSKPGIGTNISTDTRSALYIGG 107
VDG SKPG G+ ++ R Y+ G
Sbjct: 269 VDGFLSKPGPGSGRNSGDRQFFYVNG 294
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,163,949
Number of Sequences: 37544
Number of extensions: 268889
Number of successful extensions: 706
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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