Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_L13
(550 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X62515-1|CAA44373.1| 4393|Homo sapiens Human basement membrane h... 37 0.041
M85289-1|AAA52700.1| 4391|Homo sapiens heparan sulfate proteogly... 37 0.054
AL590556-2|CAH71870.1| 4391|Homo sapiens heparan sulfate proteog... 37 0.054
AL590103-2|CAI12125.1| 4391|Homo sapiens heparan sulfate proteog... 37 0.054
AL445795-1|CAC18534.1| 4370|Homo sapiens heparan sulfate proteog... 37 0.054
AB209851-1|BAD93088.1| 2331|Homo sapiens Basement membrane-speci... 36 0.12
X58531-1|CAA41418.1| 2628|Homo sapiens laminin A chain protein. 35 0.16
BC062318-1|AAH62318.1| 559|Homo sapiens LAMA1 protein protein. 35 0.16
BC039051-1|AAH39051.1| 747|Homo sapiens LAMA1 protein protein. 35 0.16
AL050329-2|CAB99359.1| 399|Homo sapiens protein ( Human DNA seq... 35 0.16
BC063822-1|AAH63822.1| 1009|Homo sapiens EGF-like, fibronectin t... 33 0.87
AK097549-1|BAC05096.1| 775|Homo sapiens protein ( Homo sapiens ... 33 0.87
X84900-1|CAA59325.1| 1806|Homo sapiens alpha 3B chain of laminin... 31 2.7
L34155-1|AAA59483.1| 1713|Homo sapiens epiligrin alpha 3 subunit... 31 2.7
AY327116-1|AAQ72571.1| 3277|Homo sapiens laminin alpha 3 splice ... 31 2.7
AY327115-1|AAQ72570.1| 3333|Homo sapiens laminin alpha 3 splice ... 31 2.7
AY327114-1|AAQ72569.1| 1668|Homo sapiens laminin alpha 3 splice ... 31 2.7
AB208853-1|BAD92090.1| 1408|Homo sapiens Laminin alpha 3b chain ... 31 2.7
AB107369-1|BAD13428.1| 3333|Homo sapiens laminin alpha 3b chain ... 31 2.7
BC063620-1|AAH63620.1| 488|Homo sapiens AGRN protein protein. 29 8.1
BC034009-1|AAH34009.1| 181|Homo sapiens AGRN protein protein. 29 8.1
BC007649-1|AAH07649.1| 488|Homo sapiens AGRN protein protein. 29 8.1
BC004220-1|AAH04220.2| 116|Homo sapiens AGRN protein protein. 29 8.1
AL645608-13|CAI15575.2| 2045|Homo sapiens agrin protein. 29 8.1
AF016903-1|AAC39776.1| 2026|Homo sapiens agrin precursor protein. 29 8.1
AB191264-1|BAD52440.1| 2045|Homo sapiens agrin protein. 29 8.1
>X62515-1|CAA44373.1| 4393|Homo sapiens Human basement membrane
heparan sulfate proteoglycan core protein protein.
Length = 4393
Score = 37.1 bits (82), Expect = 0.041
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +3
Query: 21 SVGVDGH--FSKPGIGTNISTDTRSALYIGGHERAIHKMRGVRSRRGFTGCIKNIMI 185
S+ VDG S G N++ + + ++YIGG + + G R G TGC+KN+++
Sbjct: 4308 SIQVDGEELVSGRSPGPNVAVNAKGSIYIGGAPD-VATLTGGRFSSGITGCVKNLVL 4363
>M85289-1|AAA52700.1| 4391|Homo sapiens heparan sulfate proteoglycan
protein.
Length = 4391
Score = 36.7 bits (81), Expect = 0.054
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +3
Query: 21 SVGVDGH--FSKPGIGTNISTDTRSALYIGGHERAIHKMRGVRSRRGFTGCIKNIMI 185
S+ VDG S G N++ + + ++YIGG + + G R G TGC+KN+++
Sbjct: 4306 SIQVDGEELVSGRSPGPNVAVNAKGSVYIGGAPD-VATLTGGRFSSGITGCVKNLVL 4361
>AL590556-2|CAH71870.1| 4391|Homo sapiens heparan sulfate proteoglycan
2 protein.
Length = 4391
Score = 36.7 bits (81), Expect = 0.054
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +3
Query: 21 SVGVDGH--FSKPGIGTNISTDTRSALYIGGHERAIHKMRGVRSRRGFTGCIKNIMI 185
S+ VDG S G N++ + + ++YIGG + + G R G TGC+KN+++
Sbjct: 4306 SIQVDGEELVSGRSPGPNVAVNAKGSVYIGGAPD-VATLTGGRFSSGITGCVKNLVL 4361
>AL590103-2|CAI12125.1| 4391|Homo sapiens heparan sulfate proteoglycan
2 protein.
Length = 4391
Score = 36.7 bits (81), Expect = 0.054
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +3
Query: 21 SVGVDGH--FSKPGIGTNISTDTRSALYIGGHERAIHKMRGVRSRRGFTGCIKNIMI 185
S+ VDG S G N++ + + ++YIGG + + G R G TGC+KN+++
Sbjct: 4306 SIQVDGEELVSGRSPGPNVAVNAKGSVYIGGAPD-VATLTGGRFSSGITGCVKNLVL 4361
>AL445795-1|CAC18534.1| 4370|Homo sapiens heparan sulfate proteoglycan
perlecan protein.
Length = 4370
Score = 36.7 bits (81), Expect = 0.054
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +3
Query: 21 SVGVDGH--FSKPGIGTNISTDTRSALYIGGHERAIHKMRGVRSRRGFTGCIKNIMI 185
S+ VDG S G N++ + + ++YIGG + + G R G TGC+KN+++
Sbjct: 4285 SIQVDGEELVSGRSPGPNVAVNAKGSVYIGGAPD-VATLTGGRFSSGITGCVKNLVL 4340
>AB209851-1|BAD93088.1| 2331|Homo sapiens Basement membrane-specific
heparan sulfate proteoglycan core protein precursor
protein.
Length = 2331
Score = 35.5 bits (78), Expect = 0.12
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +3
Query: 21 SVGVDGH--FSKPGIGTNISTDTRSALYIGGHERAIHKMRGVRSRRGFTGCIKNIMI 185
S+ VDG S G N++ + + +YIGG + + G R G TGC+KN+++
Sbjct: 2246 SIQVDGEELVSGRSPGPNVAVNAKGNVYIGGAPD-VATLTGGRFSSGITGCVKNLVL 2301
>X58531-1|CAA41418.1| 2628|Homo sapiens laminin A chain protein.
Length = 2628
Score = 35.1 bits (77), Expect = 0.16
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = +3
Query: 51 PGIGTNISTDTRSALYIGGHERAIHKMRGVRSRRGFTGCIKNIMIGETPVQIPATAAG 224
PG ++++ + +Y+GG R+ RGV + + F GCIKN+ I + + + G
Sbjct: 2420 PGASSDLNRLDKDPIYVGGLPRSRVVRRGV-TTKSFVGCIKNLEISRSTFDLLRNSYG 2476
>BC062318-1|AAH62318.1| 559|Homo sapiens LAMA1 protein protein.
Length = 559
Score = 35.1 bits (77), Expect = 0.16
Identities = 13/42 (30%), Positives = 27/42 (64%)
Frame = +3
Query: 72 STDTRSALYIGGHERAIHKMRGVRSRRGFTGCIKNIMIGETP 197
S DT + +Y+GG+ + K + +RS+ F GC++ + + ++P
Sbjct: 493 SVDTNNPIYVGGYPAGV-KQKCLRSQTSFRGCLRKLALIKSP 533
>BC039051-1|AAH39051.1| 747|Homo sapiens LAMA1 protein protein.
Length = 747
Score = 35.1 bits (77), Expect = 0.16
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = +3
Query: 51 PGIGTNISTDTRSALYIGGHERAIHKMRGVRSRRGFTGCIKNIMIGETPVQIPATAAG 224
PG ++++ + +Y+GG R+ RGV + + F GCIKN+ I + + + G
Sbjct: 92 PGASSDLNRLDKDPIYVGGLPRSRVVRRGV-TTKSFVGCIKNLEISRSTFDLLRNSYG 148
Score = 35.1 bits (77), Expect = 0.16
Identities = 13/42 (30%), Positives = 27/42 (64%)
Frame = +3
Query: 72 STDTRSALYIGGHERAIHKMRGVRSRRGFTGCIKNIMIGETP 197
S DT + +Y+GG+ + K + +RS+ F GC++ + + ++P
Sbjct: 681 SVDTNNPIYVGGYPAGV-KQKCLRSQTSFRGCLRKLALIKSP 721
>AL050329-2|CAB99359.1| 399|Homo sapiens protein ( Human DNA
sequence from clone RP1-22I17 on chromosome 6q11.1-12
Contains the 3' end of the PHF3 gene for PHD finger
protein 3. ).
Length = 399
Score = 35.1 bits (77), Expect = 0.16
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Frame = +3
Query: 24 VGVDGHFSKPGIG------TNIST-DTRSALYIGGHE--RAIHKMRGVRSRRGFTGCIKN 176
VG +G+ GI T +S+ DT + YIGG ++ M GF GCI+
Sbjct: 46 VGAEGYLDLDGINVTEKASTKMSSLDTNTDFYIGGVSSLNLVNPMAIENEPVGFQGCIRQ 105
Query: 177 IMIGETPVQIPATAAGRNTHIGVC 248
++I +Q+ A +++G C
Sbjct: 106 VIINNQELQLTEFGAKGGSNVGDC 129
>BC063822-1|AAH63822.1| 1009|Homo sapiens EGF-like, fibronectin type
III and laminin G domains protein.
Length = 1009
Score = 32.7 bits (71), Expect = 0.87
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +3
Query: 84 RSALYIGGHERAIHKMRGVRSRRGFTGCIKNIMIGETPVQI---PATAAGRNTHIGVC 248
R+ LY+GG A +R + RGF GC++++ + + + P A +G C
Sbjct: 507 RTPLYLGGAPSAYWLVRATGTNRGFQGCVQSLAVNGRRIDMRPWPLGKALSGADVGEC 564
>AK097549-1|BAC05096.1| 775|Homo sapiens protein ( Homo sapiens
cDNA FLJ40230 fis, clone TESTI2022960, weakly similar to
Drosophila melanogaster SP2353 mRNA. ).
Length = 775
Score = 32.7 bits (71), Expect = 0.87
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +3
Query: 84 RSALYIGGHERAIHKMRGVRSRRGFTGCIKNIMIGETPVQI---PATAAGRNTHIGVC 248
R+ LY+GG A +R + RGF GC++++ + + + P A +G C
Sbjct: 273 RTPLYLGGAPSAYWLVRATGTNRGFQGCVQSLAVNGRRIDMRPWPLGKALSGADVGEC 330
>X84900-1|CAA59325.1| 1806|Homo sapiens alpha 3B chain of laminin-5
protein.
Length = 1806
Score = 31.1 bits (67), Expect = 2.7
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +3
Query: 30 VDGHFSKPG-IGTNISTDTRSALYIGGHERAIHKMRGVRSRRGFTGCIKNIMIGETPVQI 206
VDG ++ G + N + R+ +Y+G K S F GC+KN + P+
Sbjct: 1557 VDGLRAREGSLPGNSTISIRAPVYLGSPPSGKPKSLPTNS---FVGCLKNFQLDSKPLYT 1613
Query: 207 PATAAGRNTHIG 242
P+++ G ++ +G
Sbjct: 1614 PSSSFGVSSCLG 1625
>L34155-1|AAA59483.1| 1713|Homo sapiens epiligrin alpha 3 subunit
protein.
Length = 1713
Score = 31.1 bits (67), Expect = 2.7
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +3
Query: 30 VDGHFSKPG-IGTNISTDTRSALYIGGHERAIHKMRGVRSRRGFTGCIKNIMIGETPVQI 206
VDG ++ G + N + R+ +Y+G K S F GC+KN + P+
Sbjct: 1464 VDGLRAREGSLPGNSTISIRAPVYLGSPPSGKPKSLPTNS---FVGCLKNFQLDSKPLYT 1520
Query: 207 PATAAGRNTHIG 242
P+++ G ++ +G
Sbjct: 1521 PSSSFGVSSCLG 1532
>AY327116-1|AAQ72571.1| 3277|Homo sapiens laminin alpha 3 splice
variant b2 protein.
Length = 3277
Score = 31.1 bits (67), Expect = 2.7
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +3
Query: 30 VDGHFSKPG-IGTNISTDTRSALYIGGHERAIHKMRGVRSRRGFTGCIKNIMIGETPVQI 206
VDG ++ G + N + R+ +Y+G K S F GC+KN + P+
Sbjct: 3028 VDGLRAREGSLPGNSTISIRAPVYLGSPPSGKPKSLPTNS---FVGCLKNFQLDSKPLYT 3084
Query: 207 PATAAGRNTHIG 242
P+++ G ++ +G
Sbjct: 3085 PSSSFGVSSCLG 3096
>AY327115-1|AAQ72570.1| 3333|Homo sapiens laminin alpha 3 splice
variant b1 protein.
Length = 3333
Score = 31.1 bits (67), Expect = 2.7
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +3
Query: 30 VDGHFSKPG-IGTNISTDTRSALYIGGHERAIHKMRGVRSRRGFTGCIKNIMIGETPVQI 206
VDG ++ G + N + R+ +Y+G K S F GC+KN + P+
Sbjct: 3084 VDGLRAREGSLPGNSTISIRAPVYLGSPPSGKPKSLPTNS---FVGCLKNFQLDSKPLYT 3140
Query: 207 PATAAGRNTHIG 242
P+++ G ++ +G
Sbjct: 3141 PSSSFGVSSCLG 3152
>AY327114-1|AAQ72569.1| 1668|Homo sapiens laminin alpha 3 splice
variant a protein.
Length = 1668
Score = 31.1 bits (67), Expect = 2.7
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +3
Query: 30 VDGHFSKPG-IGTNISTDTRSALYIGGHERAIHKMRGVRSRRGFTGCIKNIMIGETPVQI 206
VDG ++ G + N + R+ +Y+G K S F GC+KN + P+
Sbjct: 1419 VDGLRAREGSLPGNSTISIRAPVYLGSPPSGKPKSLPTNS---FVGCLKNFQLDSKPLYT 1475
Query: 207 PATAAGRNTHIG 242
P+++ G ++ +G
Sbjct: 1476 PSSSFGVSSCLG 1487
>AB208853-1|BAD92090.1| 1408|Homo sapiens Laminin alpha 3b chain
variant protein.
Length = 1408
Score = 31.1 bits (67), Expect = 2.7
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +3
Query: 30 VDGHFSKPG-IGTNISTDTRSALYIGGHERAIHKMRGVRSRRGFTGCIKNIMIGETPVQI 206
VDG ++ G + N + R+ +Y+G K S F GC+KN + P+
Sbjct: 1159 VDGLRAREGSLPGNSTISIRAPVYLGSPPSGKPKSLPTNS---FVGCLKNFQLDSKPLYT 1215
Query: 207 PATAAGRNTHIG 242
P+++ G ++ +G
Sbjct: 1216 PSSSFGVSSCLG 1227
>AB107369-1|BAD13428.1| 3333|Homo sapiens laminin alpha 3b chain
protein.
Length = 3333
Score = 31.1 bits (67), Expect = 2.7
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +3
Query: 30 VDGHFSKPG-IGTNISTDTRSALYIGGHERAIHKMRGVRSRRGFTGCIKNIMIGETPVQI 206
VDG ++ G + N + R+ +Y+G K S F GC+KN + P+
Sbjct: 3084 VDGLRAREGSLPGNSTISIRAPVYLGSPPSGKPKSLPTNS---FVGCLKNFQLDSKPLYT 3140
Query: 207 PATAAGRNTHIG 242
P+++ G ++ +G
Sbjct: 3141 PSSSFGVSSCLG 3152
>BC063620-1|AAH63620.1| 488|Homo sapiens AGRN protein protein.
Length = 488
Score = 29.5 bits (63), Expect = 8.1
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 78 DTRSALYIGG-HERAIHKMRGVRSRRGFTGCIKNIMIGETPVQIPATAAGRNTHIGVCP 251
DT AL++GG E + GF GC++++++G P+ + A + + CP
Sbjct: 429 DTDGALWLGGLPELPVGPALPKAYGTGFVGCLRDVVVGRHPLHLLEDAVTK-PELRPCP 486
>BC034009-1|AAH34009.1| 181|Homo sapiens AGRN protein protein.
Length = 181
Score = 29.5 bits (63), Expect = 8.1
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 78 DTRSALYIGG-HERAIHKMRGVRSRRGFTGCIKNIMIGETPVQIPATAAGRNTHIGVCP 251
DT AL++GG E + GF GC++++++G P+ + A + + CP
Sbjct: 122 DTDGALWLGGLPELPVGPALPKAYGTGFVGCLRDVVVGRHPLHLLEDAVTK-PELRPCP 179
>BC007649-1|AAH07649.1| 488|Homo sapiens AGRN protein protein.
Length = 488
Score = 29.5 bits (63), Expect = 8.1
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 78 DTRSALYIGG-HERAIHKMRGVRSRRGFTGCIKNIMIGETPVQIPATAAGRNTHIGVCP 251
DT AL++GG E + GF GC++++++G P+ + A + + CP
Sbjct: 429 DTDGALWLGGLPELPVGPALPKAYGTGFVGCLRDVVVGRHPLHLLEDAVTK-PELRPCP 486
>BC004220-1|AAH04220.2| 116|Homo sapiens AGRN protein protein.
Length = 116
Score = 29.5 bits (63), Expect = 8.1
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 78 DTRSALYIGG-HERAIHKMRGVRSRRGFTGCIKNIMIGETPVQIPATAAGRNTHIGVCP 251
DT AL++GG E + GF GC++++++G P+ + A + + CP
Sbjct: 57 DTDGALWLGGLPELPVGPALPKAYGTGFVGCLRDVVVGRHPLHLLEDAVTK-PELRPCP 114
>AL645608-13|CAI15575.2| 2045|Homo sapiens agrin protein.
Length = 2045
Score = 29.5 bits (63), Expect = 8.1
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 78 DTRSALYIGG-HERAIHKMRGVRSRRGFTGCIKNIMIGETPVQIPATAAGRNTHIGVCP 251
DT AL++GG E + GF GC++++++G P+ + A + + CP
Sbjct: 1986 DTDGALWLGGLPELPVGPALPKAYGTGFVGCLRDVVVGRHPLHLLEDAVTK-PELRPCP 2043
>AF016903-1|AAC39776.1| 2026|Homo sapiens agrin precursor protein.
Length = 2026
Score = 29.5 bits (63), Expect = 8.1
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 78 DTRSALYIGG-HERAIHKMRGVRSRRGFTGCIKNIMIGETPVQIPATAAGRNTHIGVCP 251
DT AL++GG E + GF GC++++++G P+ + A + + CP
Sbjct: 1967 DTDGALWLGGLPELPVGPALPKAYGTGFVGCLRDVVVGRHPLHLLEDAVTK-PELRPCP 2024
>AB191264-1|BAD52440.1| 2045|Homo sapiens agrin protein.
Length = 2045
Score = 29.5 bits (63), Expect = 8.1
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 78 DTRSALYIGG-HERAIHKMRGVRSRRGFTGCIKNIMIGETPVQIPATAAGRNTHIGVCP 251
DT AL++GG E + GF GC++++++G P+ + A + + CP
Sbjct: 1986 DTDGALWLGGLPELPVGPALPKAYGTGFVGCLRDVVVGRHPLHLLEDAVTK-PELRPCP 2043
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,434,993
Number of Sequences: 237096
Number of extensions: 1398244
Number of successful extensions: 2941
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 2736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2939
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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