Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_L13
(550 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr... 31 0.72
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p... 31 0.72
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt... 31 0.72
Z31590-8|CAA83465.1| 812|Caenorhabditis elegans Hypothetical pr... 30 0.95
AF518559-1|AAM97343.1| 793|Caenorhabditis elegans inositol poly... 30 0.95
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr... 29 2.9
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein. 29 2.9
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ... 29 2.9
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 29 2.9
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 29 2.9
AF045644-2|AAC02600.1| 454|Caenorhabditis elegans Hypothetical ... 28 3.9
>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical
protein C29A12.4 protein.
Length = 1560
Score = 30.7 bits (66), Expect = 0.72
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = +3
Query: 42 FSKPGIGTNISTDTRSALYIGG--HERAIH--KMRGVRSRRGFTGCIKNIMIGETPVQI 206
FS PG+ N+ D ++IG + ++ + + ++G+TGCIKNI + +I
Sbjct: 575 FSTPGVSANLIID--DPIFIGNVPNNSLVYPSSVWSIALQKGYTGCIKNIRMNGVSTKI 631
>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
protein F41G3.12 protein.
Length = 1483
Score = 30.7 bits (66), Expect = 0.72
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 66 NISTDTRSALYIGGHERAIHKM-RGVRSRRGFTGCIKNIMI 185
+++ D+ +Y+GG HK+ + + F GC+KN+ I
Sbjct: 1420 DVNLDSNGLVYLGGANPKKHKLLKSLNLSNKFVGCVKNLKI 1460
>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
protein) homologfamily member protein.
Length = 1473
Score = 30.7 bits (66), Expect = 0.72
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 66 NISTDTRSALYIGGHERAIHKM-RGVRSRRGFTGCIKNIMI 185
+++ D+ +Y+GG HK+ + + F GC+KN+ I
Sbjct: 1410 DVNLDSNGLVYLGGANPKKHKLLKSLNLSNKFVGCVKNLKI 1450
>Z31590-8|CAA83465.1| 812|Caenorhabditis elegans Hypothetical
protein R01H10.7 protein.
Length = 812
Score = 30.3 bits (65), Expect = 0.95
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -1
Query: 172 LMQPVNPRLDRTPRILCIARSCPPMYSADRVSVDMFVPMP 53
L Q V RL R P +C R+C PM R S+ + +P+P
Sbjct: 583 LEQRVRFRLVRAPSAVC--RTCIPMIQGTRSSLKVAIPLP 620
>AF518559-1|AAM97343.1| 793|Caenorhabditis elegans inositol
polyphosphate-4-phosphataseprotein.
Length = 793
Score = 30.3 bits (65), Expect = 0.95
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -1
Query: 172 LMQPVNPRLDRTPRILCIARSCPPMYSADRVSVDMFVPMP 53
L Q V RL R P +C R+C PM R S+ + +P+P
Sbjct: 564 LEQRVRFRLVRAPSAVC--RTCIPMIQGTRSSLKVAIPLP 601
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 81 TRSALYIGGHERAIHKMRGVRSRRGFTGCIKNIMIG 188
T+ LY GG + +G+++ + F GCI+ + G
Sbjct: 3606 TKDPLYFGGLPEGVTN-KGIKTNKPFVGCIRFVSFG 3640
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 81 TRSALYIGGHERAIHKMRGVRSRRGFTGCIKNIMIG 188
T+ LY GG + +G+++ + F GCI+ + G
Sbjct: 3638 TKDPLYFGGLPEGVTN-KGIKTNKPFVGCIRFVSFG 3672
>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical protein
F40E10.4 protein.
Length = 1410
Score = 28.7 bits (61), Expect = 2.9
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Frame = +3
Query: 54 GIGTNISTDTRSALYIGGH--ERAIHKMRG--VRSRRGFTGCIKNIMIGETPVQIPATAA 221
G + T + LYIGG E++ R V++ GCI +I I E P+ +
Sbjct: 1218 GKSDQLITKGKEMLYIGGLPIEKSQDAKRRFHVKNSESLKGCISSITINEVPINLQQALE 1277
Query: 222 GRNT 233
NT
Sbjct: 1278 NVNT 1281
>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
Length = 1518
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 81 TRSALYIGGHERAIHKMRGVRSRRGFTGCIKNIMIG 188
T+ LY GG + +G+++ + F GCI+ + G
Sbjct: 1452 TKDPLYFGGLPEGVTN-KGIKTNKPFVGCIRFVSFG 1486
>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 28.7 bits (61), Expect = 2.9
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Frame = +3
Query: 54 GIGTNISTDTRSALYIGGH--ERAIHKMRG--VRSRRGFTGCIKNIMIGETPVQIPATAA 221
G + T + LYIGG E++ R V++ GCI +I I E P+ +
Sbjct: 1218 GKSDQLITKGKEMLYIGGLPIEKSQDAKRRFHVKNSESLKGCISSITINEVPINLQQALE 1277
Query: 222 GRNT 233
NT
Sbjct: 1278 NVNT 1281
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 81 TRSALYIGGHERAIHKMRGVRSRRGFTGCIKNIMIG 188
T+ LY GG + +G+++ + F GCI+ + G
Sbjct: 3638 TKDPLYFGGLPEGVTN-KGIKTNKPFVGCIRFVSFG 3672
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 81 TRSALYIGGHERAIHKMRGVRSRRGFTGCIKNIMIG 188
T+ LY GG + +G+++ + F GCI+ + G
Sbjct: 3638 TKDPLYFGGLPEGVTN-KGIKTNKPFVGCIRFVSFG 3672
>AF045644-2|AAC02600.1| 454|Caenorhabditis elegans Hypothetical
protein F57H12.4 protein.
Length = 454
Score = 28.3 bits (60), Expect = 3.9
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = -1
Query: 508 WPTLNER*YSVLFLFAYLNP-FDFHTFFSHNNNFVRALRRVSK*EADSVERNKMTTNIYL 332
W T + +VLF+ +++ F +FF VR L + E + +N+ YL
Sbjct: 174 WSTRSNT-ITVLFVITFISAIFKLPSFFE-----VR-LDHNGEVEPTELRKNEFYIEFYL 226
Query: 331 YACYVTFIL*LQWIMI 284
+ YVTFI + W +I
Sbjct: 227 FYLYVTFIQLIPWTLI 242
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,281,702
Number of Sequences: 27780
Number of extensions: 227030
Number of successful extensions: 497
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -