Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_L13
         (550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.6  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   6.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 12/45 (26%), Positives = 17/45 (37%)
 Frame = -1

Query: 145  DRTPRILCIARSCPPMYSADRVSVDMFVPMPGFEK*PSTPTDTTY 11
            D +P    + +  PP YS   VSV     +P     P    +  Y
Sbjct: 1256 DSSPATALMLQHAPPAYSCGTVSVPQQQQLPPSSPQPRLTVNHAY 1300


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/32 (28%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 187 PIMMFLMQPVNPRLDRTPRILCIARSCP-PMY 95
           P+++     V+   D +  ++C+A++CP P Y
Sbjct: 238 PVILENSGVVHVAQDESTSLVCVAQACPTPEY 269


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/32 (28%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 187 PIMMFLMQPVNPRLDRTPRILCIARSCP-PMY 95
           P+++     V+   D +  ++C+A++CP P Y
Sbjct: 238 PVILENSGVVHVAQDESTSLVCVAQACPTPEY 269


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 77  RRYVRTDARLREVTVDPHGHHVQ 9
           RR+V T +R  EV  DP+   V+
Sbjct: 454 RRWVSTMSRPFEVRYDPYTQRVE 476


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 217  PPAGTRTSASAH 252
            PP G  T+ASAH
Sbjct: 1761 PPVGHPTNASAH 1772


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,538
Number of Sequences: 438
Number of extensions: 3425
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)