Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_L12
(507 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch... 29 0.53
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 28 0.70
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 27 1.6
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra... 27 1.6
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 27 2.1
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos... 27 2.1
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar... 27 2.1
SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr... 27 2.1
SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|c... 25 4.9
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 25 4.9
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.5
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 25 6.5
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 8.6
>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 891
Score = 28.7 bits (61), Expect = 0.53
Identities = 24/83 (28%), Positives = 40/83 (48%)
Frame = +3
Query: 255 PKVLSQL*SMNLAKEYLTAML*MYTWMKSILKYLYKHQILSEGLMTSYLLSLFQQSNQHG 434
P++LS L +M++ +YL + + YT + +I+ LY Q LS +TS+ S
Sbjct: 162 PELLSSLVTMHI--QYLNSTIQFYTTLIAIIGELYHLQCLSP--LTSFFTSCVTPKT--- 214
Query: 435 ILHLSMLKHSNLLWSKLTTKVSK 503
IL + K + W T S+
Sbjct: 215 ILESPLRKQGSHNWKTSTNSQSR 237
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 28.3 bits (60), Expect = 0.70
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
Frame = +2
Query: 62 ITMSEKHLQTGDVLPQYSGKLRVFAMRFCPYAERT-----VLVLNAKNLQYDLVFIN-LD 223
+ + +LQT +VLP+ + +RF PYA T ++ ++ N+Q DL +N
Sbjct: 448 VVLENLNLQTANVLPKLAEFRNNNFVRFSPYANITSFRENMINVHLSNIQCDLKDVNYYI 507
Query: 224 QKPEWIYNFSPKGAVPALEYESGK--GIFDSNVINVYLDEKYPEIPLQASD 370
++ + F+ G V L + G + S+ N + + P+ + D
Sbjct: 508 KRKQGFPTFTDLGVVDLLIGKQGMVVNLTLSSFSNTMFENELPDSFFKVED 558
>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 512
Score = 27.1 bits (57), Expect = 1.6
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +2
Query: 182 AKNLQYDLVFINLDQKP 232
AK +QYD +++NL +KP
Sbjct: 3 AKTVQYDNIYLNLSEKP 19
>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
3-phosphatidyltransferase Pis1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 27.1 bits (57), Expect = 1.6
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = -2
Query: 125 AVSHYIVAKHH----RFANASRTLLFIFCLQNKLYYAQVLL 15
A SH V K H R + +LFIFC N++++ + L
Sbjct: 136 ASSHKTVTKKHNWMLRLYYGNNKVLFIFCAANEMFFVALYL 176
>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 727
Score = 26.6 bits (56), Expect = 2.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 77 KHLQTGDVLPQYSGKLRVFAMR 142
K L+TG ++PQ LRVF +R
Sbjct: 15 KRLETGLIIPQLKDILRVFGLR 36
>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 467
Score = 26.6 bits (56), Expect = 2.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 103 QNITGLQMLLGHCYLFSVYKINCTMHRF 20
QNI+ Q L+ +L+S + C +H F
Sbjct: 315 QNISSYQRLVSFAHLYSYTSVKCLVHWF 342
>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 26.6 bits (56), Expect = 2.1
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = +1
Query: 115 WETACVCYEILSLCRENCISVEREE 189
W T C CY+ C + C+ E ++
Sbjct: 229 WSTVCGCYKNTYTCSQTCLEDEVQD 253
>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 327
Score = 26.6 bits (56), Expect = 2.1
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +2
Query: 203 LVFINLDQKPEWIYNFSPKGAVPALEYESGKGIFDSNVINVYLDEKYPEIPLQASD 370
+VF +W Y+FS + + LE SG GI + + + KYP + +D
Sbjct: 163 VVFSKKILSDDWHYSFSNRKDINVLELGSGCGI-----VGISIASKYPRALVSMTD 213
Score = 25.0 bits (52), Expect = 6.5
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 170 LVLNAKNLQYDLVFINLDQK-PEWIYNFSPKGAVPALEYESGKG 298
L L +N D + IN D P W FSPK +P + + +G
Sbjct: 91 LHLENQNSIVDSIHINADTVLPVWSEAFSPKSTLPNMVWRYIQG 134
>SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 101
Score = 25.4 bits (53), Expect = 4.9
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +2
Query: 128 VFAMRFCPYAERTVLVLNAKNLQYDLVFINLDQKPEWIYNF 250
VFA +CPY T V+ K ++ + I+L + I ++
Sbjct: 19 VFAKSYCPYCHATEKVIADKKIKAQVYQIDLMNNGDEIQSY 59
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 25.4 bits (53), Expect = 4.9
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -3
Query: 112 ILWQNITGLQMLLGHCYLFSVYKINC 35
++ N+ + +L HC LFS+ I C
Sbjct: 1703 VVEMNLFAMDFILSHCILFSLTPILC 1728
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.0 bits (52), Expect = 6.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 339 FSSRYTFITLLSNIPLPDSYSKAGTAP 259
++S +F + S+ P+ SYS +GT P
Sbjct: 205 WNSSSSFTSSTSSTPISSSYSSSGTLP 231
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 25.0 bits (52), Expect = 6.5
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1
Query: 355 FTSIRSSPKGS*QATC*VFFSSPISMVYCIF 447
F +RS + C +F SP ++V+C+F
Sbjct: 356 FCHVRSYLSAILPSVCRIFLPSPGTVVFCVF 386
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 8.6
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +2
Query: 377 RRAHDKLLVESFSAVQSAWYTASFNAQALQPTMVE 481
RRAH+K + +S + W N ++P+M +
Sbjct: 60 RRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMAD 94
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,338,090
Number of Sequences: 5004
Number of extensions: 51036
Number of successful extensions: 152
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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