Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_L07
         (604 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal pro...   239   1e-63
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical...    33   0.16 
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ...    29   3.4  
AF100656-5|AAF99963.2|  259|Caenorhabditis elegans Hypothetical ...    27   7.8  
AF016676-3|AAG24101.2|  494|Caenorhabditis elegans Cytochrome p4...    27   7.8  

>AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 9 protein.
          Length = 189

 Score =  239 bits (584), Expect = 1e-63
 Identities = 109/186 (58%), Positives = 141/186 (75%)
 Frame = +3

Query: 27  MKQIVANQKVKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQLKVEKWFG 206
           MK I +N  V  PE +T  VK+R+V V GPRG ++++F+HL +++  +    L+V KWFG
Sbjct: 1   MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERIGKSTLRVRKWFG 60

Query: 207 SKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNTIIEIRNFLGEKY 386
            +KELAA+RTVCSH++NMIKGVT GF+YKMR+VYAHFPIN    +GN  +EIRNFLGEK 
Sbjct: 61  VRKELAAIRTVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKI 120

Query: 387 IRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNNDIRKFLDGLYVS 566
           +RRV +  GV    S  QKDE+++EGN ++ VS +AA IQQST VK  DIRKFLDG+YVS
Sbjct: 121 VRRVPLPEGVIATISTAQKDEIVVEGNDVQFVSQAAARIQQSTAVKEKDIRKFLDGIYVS 180

Query: 567 EKTTVV 584
           EKTT+V
Sbjct: 181 EKTTIV 186


>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
           protein Y47G6A.29 protein.
          Length = 2460

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 17/63 (26%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
 Frame = +3

Query: 144 HLAVDIRMVNPRQLKVEKWFGSKKELAAVRTVC---SHVENMIKGVT--KGFQYKMRAVY 308
           H+  D++++  ++  ++ WF   ++L ++RT C   S ++  I  +T  KGF + M+A +
Sbjct: 361 HVKHDVKIILTKETCMDIWFMRGEQLESIRTRCGPLSSLDMSILWITTEKGFYWNMKAEF 420

Query: 309 AHF 317
            +F
Sbjct: 421 LNF 423


>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
            protein D1007.15 protein.
          Length = 1184

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = +3

Query: 270  VTKGFQYKMRAVYAHFPINCVTTEGNTIIEIRNFLGEKYIRRVKMA 407
            ++  F Y + +++  FPI C+  +   I+ +   +G  Y+R V ++
Sbjct: 1085 LSSSFVYGLSSLWYEFPIKCLLWDAAVIVCLITQIGYSYLRGVHLS 1130


>AF100656-5|AAF99963.2|  259|Caenorhabditis elegans Hypothetical
           protein F49F1.6 protein.
          Length = 259

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 227 C*DSMLSCRKHDQRCDQGIPIQDACSVRSFPYQLCH 334
           C DSM++C     +CDQG  +Q  C    +   +CH
Sbjct: 21  CEDSMITCPDLKDQCDQGF-VQSQC---PYTCGICH 52


>AF016676-3|AAG24101.2|  494|Caenorhabditis elegans Cytochrome p450
           family protein 33C5 protein.
          Length = 494

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 82  WTVRLSGIFTFWFATICFIL 23
           WT +  G++TFW   I +++
Sbjct: 54  WTKQFGGVYTFWMGNIPYVI 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,191,482
Number of Sequences: 27780
Number of extensions: 305852
Number of successful extensions: 843
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)