Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_L06
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae Q0...    40   4e-04
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    27   1.5  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.7  
SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   6.2  
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    25   6.2  
SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c...    25   8.2  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   8.2  

>SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae
           Q0130|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 74

 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 21/54 (38%), Positives = 27/54 (50%)
 Frame = +1

Query: 244 AAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYAMNPSLKQQLFSYAILGFALSE 405
           AAK+                    F +LI G + NPS++  LFS AILGFAL+E
Sbjct: 4   AAKYIGAGLATIGVSGAGVGIGLIFSNLISGTSRNPSVRPHLFSMAILGFALTE 57


>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = -2

Query: 573 EDEVSTHSIPRPSTP----DSNNTETSLCRMASCSVLKIIDSLESEQQKERHH 427
           +D  S  + PR ST     +S NTE    R    S+L +ID  E + +++RH+
Sbjct: 84  DDNSSLVNTPRDSTTYAETNSPNTEKLAGRDDDRSLLNLIDRGEIDSKRQRHY 136


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = +2

Query: 8   APPSRC----SLLSVVAPLKTQKCCMPQD*SPLQPGLLSSATQLLCDHS 142
           +PPSR     S+LS   PLK          SPL+    SS T ++ DHS
Sbjct: 206 SPPSRVKLPTSILSKSPPLKVPNKNRSSTFSPLRTPTSSSKTFVIVDHS 254


>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
 Frame = +2

Query: 446 CSLSKLSIILRTLQLAILHNEVSVLL-----LSGVDGRGIECVETSSS 574
           C +S  ++ +    +AI  N  +VLL     L    GRG  CVET+SS
Sbjct: 71  CHVSGSNLCVSPDVIAICANHSTVLLNCPTVLGYPKGRGSACVETNSS 118


>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 63  NAVCRKIDRPCSQDCYLQQHSSCATTRSS 149
           +A    + +PCSQ  +L++  SC T  S+
Sbjct: 377 SAYVASLPQPCSQKRHLEEDYSCLTEHSA 405


>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 466

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +2

Query: 446 CSLSKLSI---ILRTLQLAILHNEVSVLLLSGVDGR 544
           C+++KLS    I RT      H E++  LL G DGR
Sbjct: 166 CTITKLSKGENIYRTHIHTTTHGELTTKLLIGADGR 201


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 156  CRHCCEWSHKSCVAEDS 106
            C +C EW H  CV   S
Sbjct: 1472 CHNCLEWFHYECVGLSS 1488


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,303,795
Number of Sequences: 5004
Number of extensions: 42238
Number of successful extensions: 113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)