Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_L05
         (429 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   2.9  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    25   3.8  
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    25   5.0  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    24   8.7  

>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -1

Query: 258 AHTGVPATVHVLHRTQCAPNSASRMHLFSPPQRTPSHVSVIRTS 127
           +H G    +H+LH     PN A+R ++ +   +  +H +V+ +S
Sbjct: 90  SHKGTTTKLHILH----PPNPATRSYMLTQLFQINTHGTVVNSS 129


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 228 VLHRTQCAPNSASRMHLFSPPQRTPSHVSV 139
           V+  +  AP+  + + L  PP  TP H +V
Sbjct: 519 VIQASLTAPSQPASLSLLGPPGNTPGHRNV 548


>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 17/65 (26%), Positives = 26/65 (40%)
 Frame = +2

Query: 230 CTVAGTPVCAVDGKTYAGACALRMAVCERGKALPLAYKVTLFSKRNMHFYIVWTESKVCS 409
           C V  +   +  G  Y G  A         KA P+A + TLF     +   ++  S + S
Sbjct: 273 CAVFTSAAFSFSGTEYVGVAAAETE--NPAKAFPVAVRQTLFRIAIFYILSLFIVSLLIS 330

Query: 410 GSSER 424
           G+  R
Sbjct: 331 GADPR 335


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -1

Query: 270 FPSTAHTGVPATVHVLHRTQCAPNSASRMHLFSPPQRTPSHVSVIRTSRP 121
           + ST  + VP+ V  L  ++  P+  +    F   + +PS  SV+ TS+P
Sbjct: 254 YESTVASPVPSRVAKLS-SRDTPSIIADYDEFRKSESSPSRSSVLSTSKP 302


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,643,967
Number of Sequences: 5004
Number of extensions: 29477
Number of successful extensions: 66
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)