Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_L05
(429 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0132 - 10505910-10505996,10507419-10507499,10509582-105105... 30 0.69
02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,444... 29 1.2
07_01_0616 + 4560866-4560952,4561144-4561208,4564481-4564913,456... 29 1.6
10_08_1038 - 22485394-22485960,22486712-22487197 29 2.1
08_02_0104 + 12404890-12405129,12405244-12405333,12405953-124060... 28 2.8
08_01_0768 + 7408004-7408159,7409101-7409297,7427823-7428206,742... 28 2.8
02_04_0094 + 19664434-19665078 28 2.8
11_04_0150 + 14127378-14127612,14127705-14128144 28 3.7
10_08_0026 - 14253680-14253894,14253981-14254109,14254704-142547... 28 3.7
01_01_0150 - 1344247-1345011 27 4.9
11_03_0155 + 10871512-10871949,10874414-10874695,10874782-108749... 27 6.4
05_03_0620 - 16286207-16286342,16286861-16286955,16287051-162871... 27 6.4
09_01_0033 + 546670-546885,547497-547637,548025-548291 27 8.5
01_01_0156 - 1364856-1365401 27 8.5
>11_03_0132 -
10505910-10505996,10507419-10507499,10509582-10510528,
10510645-10510742,10511273-10511442,10511551-10511832,
10514544-10514936
Length = 685
Score = 30.3 bits (65), Expect = 0.69
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +2
Query: 176 KRCILDAEFGAHCVRCSTCTVAGTPVCAVD---GKTYAGACAL 295
K C++DA+ A CV C+ + G P CA KT+ G L
Sbjct: 240 KSCVVDAK--ASCVMCAYTDINGVPACASSDLLSKTFRGQWGL 280
>02_01_0598 +
4440018-4440070,4440627-4440693,4440794-4440926,
4441075-4441120,4442470-4442521,4442601-4442753,
4443338-4443457,4443549-4443714,4443822-4443934,
4444049-4444120,4444992-4445213,4445270-4445317,
4445639-4445697,4445809-4445887,4445982-4446119,
4446327-4446551,4446643-4447430,4447548-4447723,
4447911-4448169,4448646-4448707,4451055-4451212,
4451618-4451743,4452197-4452260,4452386-4452494,
4452607-4452760,4453055-4453178,4453257-4453333,
4453442-4453494,4453673-4453727,4453833-4454021
Length = 1379
Score = 29.5 bits (63), Expect = 1.2
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = +2
Query: 281 GACALRMAVCERGKALPLAYKVTLFSKRNMHFYIVWTESKVCSGSSE 421
G CA AV ERG+ L + K H Y VW GS +
Sbjct: 358 GGCAFEQAVMERGRGNSL-FSFLFDLKSKEHTYYVWRLYSFAQGSGD 403
>07_01_0616 +
4560866-4560952,4561144-4561208,4564481-4564913,
4565634-4565786,4565875-4565946,4567602-4567712,
4568344-4568584,4568743-4568821,4568892-4569018
Length = 455
Score = 29.1 bits (62), Expect = 1.6
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -1
Query: 219 RTQCAPNSASRMHLFSPPQRTPSHVSVIRTSRPWH 115
RTQC+P SA + + + P+ T + + PW+
Sbjct: 357 RTQCSPKSAPKTGVAAKPRATKGVMKNVGKPEPWY 391
>10_08_1038 - 22485394-22485960,22486712-22487197
Length = 350
Score = 28.7 bits (61), Expect = 2.1
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 300 ILRAHAPAYVFPSTAHTGVPATVHVLHRTQCAPNS 196
ILR HAP + S AH P + H T AP++
Sbjct: 110 ILRIHAPIGLARSPAHLLAPTPANTPHLTAAAPHA 144
>08_02_0104 +
12404890-12405129,12405244-12405333,12405953-12406036,
12406888-12407132,12409032-12409095,12409270-12409968,
12410063-12410176,12410287-12410418,12410594-12410770,
12411085-12411138,12411230-12411292,12411396-12412307,
12412408-12412535,12413680-12413962
Length = 1094
Score = 28.3 bits (60), Expect = 2.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 213 QCAPNSASRMHLFSPPQRTPSHVSVIRTSRPWH 115
QC N +H FS P+ +++S + T +P H
Sbjct: 686 QCRQNGLKNIHQFSWPEHCKNYLSRVGTLKPRH 718
>08_01_0768 +
7408004-7408159,7409101-7409297,7427823-7428206,
7428456-7428837
Length = 372
Score = 28.3 bits (60), Expect = 2.8
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = -1
Query: 267 PSTAHTGVPATVHVLHRTQCAPNSASRMHLFSPPQRTPSHVSVIRTSRPWH 115
P A+ G +H + C P SA+++H P R P+ +P H
Sbjct: 258 PVEANLGRSNVARDVHESLCVPVSAAKVHNQKPAPRDPASRFCRNCRKPGH 308
>02_04_0094 + 19664434-19665078
Length = 214
Score = 28.3 bits (60), Expect = 2.8
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = -1
Query: 333 RGSAFPRSQTAILRAHAPAYVFPSTAHTGVPATVHVLHRTQCAPNSASRMH 181
+G++ P+S A A APA P+ A G A V+ A ASR H
Sbjct: 83 KGASNPKSAAACSCAGAPAARMPTCAGGGGTAKAVVIAGLPAAARKASREH 133
>11_04_0150 + 14127378-14127612,14127705-14128144
Length = 224
Score = 27.9 bits (59), Expect = 3.7
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Frame = -1
Query: 333 RGSAFPRSQTAILRAHAPAYVFPSTAHTGVPATVHVLHRTQCAPNSASR---MHLFSPPQ 163
R FPR+ TA A P+ A P H H+T AP+ ASR + PP
Sbjct: 137 RAFLFPRT-TATTTAPLSRSPSPTAASRTAPRA-HYQHQTGSAPSCASRWAARQMSLPPA 194
Query: 162 RTP 154
R P
Sbjct: 195 RVP 197
>10_08_0026 -
14253680-14253894,14253981-14254109,14254704-14254769,
14254887-14255133
Length = 218
Score = 27.9 bits (59), Expect = 3.7
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = +2
Query: 137 ITDTCEGVRCGGEKRCILDAEFGAHCVRCS 226
+TD C + CG C+ + HC CS
Sbjct: 102 LTDPCVAINCGSGGECVKEEGLSYHCA-CS 130
>01_01_0150 - 1344247-1345011
Length = 254
Score = 27.5 bits (58), Expect = 4.9
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Frame = +2
Query: 107 PGPCQGRLVRITDTCEGVRCGGEKRCILDAEFGAHCVRCSTCTVAGTPVCAVDGKTYA-- 280
PGP G L+ C+ V G + C +TCT + P+C+ K A
Sbjct: 162 PGPFPGPLI-----CDDVYWGADPGPFCTPRPWGDCCDNTTCTKSIPPICSCGDKVAACD 216
Query: 281 GAC 289
GAC
Sbjct: 217 GAC 219
>11_03_0155 +
10871512-10871949,10874414-10874695,10874782-10874951,
10875068-10875165,10875775-10877135
Length = 782
Score = 27.1 bits (57), Expect = 6.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 176 KRCILDAEFGAHCVRCSTCTVAGTPVCA 259
+ C++DA+ A C+ C+ + G P CA
Sbjct: 255 RSCVVDAK--ATCIMCAYTGINGVPACA 280
>05_03_0620 -
16286207-16286342,16286861-16286955,16287051-16287158,
16287262-16287357,16287446-16287604
Length = 197
Score = 27.1 bits (57), Expect = 6.4
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = -1
Query: 336 ARGSAFPRSQTAILRAHAPAYVFPSTAHTGVPATVHVLHRTQCAPNSASRMHLFSPPQR 160
A S PR Q A+LR H A S++ + +LH T + + SPP R
Sbjct: 13 AASSPPPRRQAALLRRHPAATTTSSSSGKRTTRLLCLLHDTPPPAPPPAADEISSPPLR 71
>09_01_0033 + 546670-546885,547497-547637,548025-548291
Length = 207
Score = 26.6 bits (56), Expect = 8.5
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +2
Query: 314 RGKALPLAYKVTLFSKRNMHFYIVWTES 397
RGKA+PL +V+ +R ++F I ++S
Sbjct: 18 RGKAIPLRSRVSFTRERQLNFAIALSDS 45
>01_01_0156 - 1364856-1365401
Length = 181
Score = 26.6 bits (56), Expect = 8.5
Identities = 20/73 (27%), Positives = 28/73 (38%)
Frame = +2
Query: 107 PGPCQGRLVRITDTCEGVRCGGEKRCILDAEFGAHCVRCSTCTVAGTPVCAVDGKTYAGA 286
PGP G L+ C V G + C +TCT + P+C + K
Sbjct: 90 PGPFPGPLI-----CSDVYWGADPGPFCTPRPWGDCCTNTTCTRSIPPICRCNDK--VKK 142
Query: 287 CALRMAVCERGKA 325
CA C+R K+
Sbjct: 143 CAAACKDCKRVKS 155
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,543,027
Number of Sequences: 37544
Number of extensions: 268267
Number of successful extensions: 826
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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