Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_L05
(429 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p... 50 7e-07
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt... 50 7e-07
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr... 32 0.20
Z83731-1|CAB06022.2| 208|Caenorhabditis elegans Hypothetical pr... 31 0.35
L21758-1|AAA16827.1| 264|Caenorhabditis elegans osteonectin pro... 31 0.46
AF036692-3|AAB88325.1| 264|Caenorhabditis elegans Osteonectin (... 31 0.46
Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical pr... 30 0.61
M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.ele... 30 0.61
U88173-9|AAK21384.3| 320|Caenorhabditis elegans Hypothetical pr... 30 0.81
U64845-2|AAC48031.2| 980|Caenorhabditis elegans Hypothetical pr... 28 3.3
Z98877-12|CAB63409.1| 528|Caenorhabditis elegans Hypothetical p... 27 4.3
Z35604-2|CAA84677.1| 809|Caenorhabditis elegans Hypothetical pr... 27 4.3
U19744-1|AAA85704.1| 809|Caenorhabditis elegans integrin beta p... 27 4.3
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ... 27 4.3
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ... 27 4.3
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ... 27 4.3
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein. 27 4.3
Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical pr... 27 5.7
AF039048-1|AAB94237.2| 480|Caenorhabditis elegans Cell division... 27 5.7
Z81117-4|CAB03319.1| 249|Caenorhabditis elegans Hypothetical pr... 27 7.5
U58750-13|AAB00653.1| 616|Caenorhabditis elegans Hypothetical p... 27 7.5
AC024824-2|AAK85502.1| 740|Caenorhabditis elegans Hypothetical ... 27 7.5
Z36237-1|CAA85271.2| 619|Caenorhabditis elegans Hypothetical pr... 26 10.0
U37548-4|AAA79200.2| 373|Caenorhabditis elegans Hypothetical pr... 26 10.0
U13076-1|AAA96984.1| 463|Caenorhabditis elegans steroid hormone... 26 10.0
AY204167-1|AAO39171.1| 619|Caenorhabditis elegans nuclear recep... 26 10.0
AF273770-1|AAG15119.1| 469|Caenorhabditis elegans nuclear recep... 26 10.0
AF083224-1|AAD03682.1| 619|Caenorhabditis elegans nuclear recep... 26 10.0
AF039042-9|AAC48245.1| 431|Caenorhabditis elegans Hypothetical ... 26 10.0
AC024791-20|AAO12400.1| 574|Caenorhabditis elegans Hypothetical... 26 10.0
AC024791-19|AAF60657.2| 618|Caenorhabditis elegans Hypothetical... 26 10.0
>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
protein F41G3.12 protein.
Length = 1483
Score = 50.0 bits (114), Expect = 7e-07
Identities = 21/60 (35%), Positives = 28/60 (46%)
Frame = +2
Query: 143 DTCEGVRCGGEKRCILDAEFGAHCVRCSTCTVAGTPVCAVDGKTYAGACALRMAVCERGK 322
D C G +C + C L + C CT+ VC DGKTY C L++A C+ K
Sbjct: 294 DPCHGHKCPNGQTCQLGVDRRPECKCSEQCTMNSAHVCGTDGKTYLNECFLKLAACKEQK 353
Score = 44.8 bits (101), Expect = 3e-05
Identities = 27/110 (24%), Positives = 45/110 (40%)
Frame = +2
Query: 20 GSDGKTYVSXXXXXXXXXXXPAKHLVMDYPGPCQGRLVRITDTCEGVRCGGEKRCILDAE 199
G+DGKTY++ LV +G CE + CG C++ +
Sbjct: 332 GTDGKTYLNECFLKLAACKEQKDILVWK-----RGNCDEAGSPCEKMECGFWGSCVVKPD 386
Query: 200 FGAHCVRCSTCTVAGTPVCAVDGKTYAGACALRMAVCERGKALPLAYKVT 349
A C + C PVCA +G+T+ C ++ CE + + ++ T
Sbjct: 387 RTAECECPNRCEDVMRPVCATNGETFDNECEMKKKSCETKSMIKVKHQGT 436
Score = 41.5 bits (93), Expect = 2e-04
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Frame = +2
Query: 110 GPCQGRLVRITDTCEGVRCGGEKRCILDAEFG---AHCVRCSTC-----TVAGTPVCAVD 265
GPC+ R + CE +RCG + C+++ G A CV + C +V +PVC+
Sbjct: 210 GPCKKR-----NPCEDLRCGPGEDCVVNQINGILLAKCVCPTQCPNYGDSVESSPVCSSH 264
Query: 266 GKTYAGACALRMAVCE 313
G Y +C LR CE
Sbjct: 265 GVDYQSSCHLRHHACE 280
Score = 38.3 bits (85), Expect = 0.002
Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 4/112 (3%)
Frame = +2
Query: 20 GSDGKTYVSXXXXXXXXXXXPAKHLVMDYPGPCQGRLVRITDTCEGVRCGGEKRCILDAE 199
GSDGKTY S K++ + Y C+ ++ +C C++
Sbjct: 477 GSDGKTY-SNECRLQNAACMAQKNIFVKYNSACEACKLKKE------KCDFYSACVVGEN 529
Query: 200 FGAHCVRCSTCTV----AGTPVCAVDGKTYAGACALRMAVCERGKALPLAYK 343
A C C G VC DG TY+ C ++ + C + K + A++
Sbjct: 530 EKAECKCPDDCPSYEMEEGKEVCGTDGVTYSSECHMKKSACHQSKFVMTAFE 581
Score = 37.5 bits (83), Expect = 0.004
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = +2
Query: 212 CVRCSTCTVAGTPVCAVDGKTYAGACALRMAVCERGKALPLAY 340
CV C +CT VC DGKTY+ C L+ A C K + + Y
Sbjct: 463 CV-CPSCTDEFKEVCGSDGKTYSNECRLQNAACMAQKNIFVKY 504
Score = 36.3 bits (80), Expect = 0.009
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Frame = +2
Query: 149 CEGVRCGGEKRCILDAEFGAHCVRCSTCT------VAGTPVCAVDGKTYAGACALRMAVC 310
C +RC +C+ C+ +C VA VC DG TY+ C L+M C
Sbjct: 840 CHSLRCFHGAKCVPSPSSFPDCICPQSCNMNHLGIVANMTVCGSDGTTYSNLCELKMFAC 899
Score = 29.9 bits (64), Expect = 0.81
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +3
Query: 309 ANAGKRYLSLTK*RCLANATCTSISCGPNPRCVVGRASG 425
A G R TK C C + CGP CVV + +G
Sbjct: 198 AKNGVRLRVATKGPCKKRNPCEDLRCGPGEDCVVNQING 236
Score = 29.1 bits (62), Expect = 1.4
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 4/104 (3%)
Frame = +2
Query: 20 GSDGKTYVSXXXXXXXXXXXPAKHLVMDYPGPCQGRLVRITDTCEGVRCGGEKRCILDAE 199
G+DG TY S +K ++ + G C D C V+C + C
Sbjct: 553 GTDGVTY-SSECHMKKSACHQSKFVMTAFEGKC--------DECLHVQCRYGEEC----R 599
Query: 200 FGAHCVRCSTCTVAGTP----VCAVDGKTYAGACALRMAVCERG 319
G CV CS A P +C +G Y C L++A C++G
Sbjct: 600 SGV-CV-CSYNCPANPPLSARICGENGVLYPSLCHLQLASCQKG 641
>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
protein) homologfamily member protein.
Length = 1473
Score = 50.0 bits (114), Expect = 7e-07
Identities = 21/60 (35%), Positives = 28/60 (46%)
Frame = +2
Query: 143 DTCEGVRCGGEKRCILDAEFGAHCVRCSTCTVAGTPVCAVDGKTYAGACALRMAVCERGK 322
D C G +C + C L + C CT+ VC DGKTY C L++A C+ K
Sbjct: 302 DPCHGHKCPNGQTCQLGVDRRPECKCSEQCTMNSAHVCGTDGKTYLNECFLKLAACKEQK 361
Score = 44.8 bits (101), Expect = 3e-05
Identities = 27/110 (24%), Positives = 45/110 (40%)
Frame = +2
Query: 20 GSDGKTYVSXXXXXXXXXXXPAKHLVMDYPGPCQGRLVRITDTCEGVRCGGEKRCILDAE 199
G+DGKTY++ LV +G CE + CG C++ +
Sbjct: 340 GTDGKTYLNECFLKLAACKEQKDILVWK-----RGNCDEAGSPCEKMECGFWGSCVVKPD 394
Query: 200 FGAHCVRCSTCTVAGTPVCAVDGKTYAGACALRMAVCERGKALPLAYKVT 349
A C + C PVCA +G+T+ C ++ CE + + ++ T
Sbjct: 395 RTAECECPNRCEDVMRPVCATNGETFDNECEMKKKSCETKSMIKVKHQGT 444
Score = 41.5 bits (93), Expect = 2e-04
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Frame = +2
Query: 110 GPCQGRLVRITDTCEGVRCGGEKRCILDAEFG---AHCVRCSTC-----TVAGTPVCAVD 265
GPC+ R + CE +RCG + C+++ G A CV + C +V +PVC+
Sbjct: 218 GPCKKR-----NPCEDLRCGPGEDCVVNQINGILLAKCVCPTQCPNYGDSVESSPVCSSH 272
Query: 266 GKTYAGACALRMAVCE 313
G Y +C LR CE
Sbjct: 273 GVDYQSSCHLRHHACE 288
Score = 38.3 bits (85), Expect = 0.002
Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 4/112 (3%)
Frame = +2
Query: 20 GSDGKTYVSXXXXXXXXXXXPAKHLVMDYPGPCQGRLVRITDTCEGVRCGGEKRCILDAE 199
GSDGKTY S K++ + Y C+ ++ +C C++
Sbjct: 485 GSDGKTY-SNECRLQNAACMAQKNIFVKYNSACEACKLKKE------KCDFYSACVVGEN 537
Query: 200 FGAHCVRCSTCTV----AGTPVCAVDGKTYAGACALRMAVCERGKALPLAYK 343
A C C G VC DG TY+ C ++ + C + K + A++
Sbjct: 538 EKAECKCPDDCPSYEMEEGKEVCGTDGVTYSSECHMKKSACHQSKFVMTAFE 589
Score = 37.5 bits (83), Expect = 0.004
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = +2
Query: 212 CVRCSTCTVAGTPVCAVDGKTYAGACALRMAVCERGKALPLAY 340
CV C +CT VC DGKTY+ C L+ A C K + + Y
Sbjct: 471 CV-CPSCTDEFKEVCGSDGKTYSNECRLQNAACMAQKNIFVKY 512
Score = 36.7 bits (81), Expect = 0.007
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Frame = +2
Query: 149 CEGVRCGGEKRCILDAEFGAHCVRCSTCT------VAGTPVCAVDGKTYAGACALRMAVC 310
C +RC +C+ C+ +C VA VC DG TY+ C L+M C
Sbjct: 779 CHSLRCFHGAKCVPSPSSFPDCICPQSCNMNHLGIVANMTVCGSDGTTYSNLCELKMFAC 838
Query: 311 E 313
+
Sbjct: 839 K 839
Score = 29.9 bits (64), Expect = 0.81
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +3
Query: 309 ANAGKRYLSLTK*RCLANATCTSISCGPNPRCVVGRASG 425
A G R TK C C + CGP CVV + +G
Sbjct: 206 AKNGVRLRVATKGPCKKRNPCEDLRCGPGEDCVVNQING 244
Score = 29.1 bits (62), Expect = 1.4
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 4/104 (3%)
Frame = +2
Query: 20 GSDGKTYVSXXXXXXXXXXXPAKHLVMDYPGPCQGRLVRITDTCEGVRCGGEKRCILDAE 199
G+DG TY S +K ++ + G C D C V+C + C
Sbjct: 561 GTDGVTY-SSECHMKKSACHQSKFVMTAFEGKC--------DECLHVQCRYGEEC----R 607
Query: 200 FGAHCVRCSTCTVAGTP----VCAVDGKTYAGACALRMAVCERG 319
G CV CS A P +C +G Y C L++A C++G
Sbjct: 608 SGV-CV-CSYNCPANPPLSARICGENGVLYPSLCHLQLASCQKG 649
>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
protein F29G6.1 protein.
Length = 1170
Score = 31.9 bits (69), Expect = 0.20
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +2
Query: 221 CST-CTVAGTPVCAVDGKTYAGACALRMAVCERGKA-LPLAY 340
CS C + P+C +G T+ AC+L+ +CE + + +AY
Sbjct: 768 CSMECDNSYDPLCGTNGVTFTNACSLQKEICESANSTIEVAY 809
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/46 (26%), Positives = 19/46 (41%)
Frame = +2
Query: 200 FGAHCVRCSTCTVAGTPVCAVDGKTYAGACALRMAVCERGKALPLA 337
+ C C GTP+C G+T+ C C K++ L+
Sbjct: 56 YNGTCCDKKECEKVGTPICDNFGETHINDCHFAQFQCIMKKSMGLS 101
Score = 27.5 bits (58), Expect = 4.3
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = +2
Query: 212 CVRCSTCTVAGTPVCAVDGKTYAGACALRMAVC 310
C ++C G PVC G+T+ C + C
Sbjct: 1067 CCALASCPKTGQPVCDSRGRTHDSLCHFHNSKC 1099
Score = 27.1 bits (57), Expect = 5.7
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Frame = +2
Query: 248 PVCAVDGKTYAGACALRMAVCE---RGKALPLA--YKVTLFSKRNMHFYIVWTES 397
PVC +G Y C +M CE + + LA K L S+ F + ES
Sbjct: 126 PVCDTNGSVYRNLCVFQMRRCELQLESQRIQLAEDRKFCLRSRETQRFKLAGVES 180
Score = 27.1 bits (57), Expect = 5.7
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +2
Query: 230 CTVAGTPVCAVDGKTYAGACALRMAVC 310
CT P+CA D TY C R C
Sbjct: 590 CTDDKHPICASDFSTYENLCQFRKQKC 616
>Z83731-1|CAB06022.2| 208|Caenorhabditis elegans Hypothetical
protein M04C9.3 protein.
Length = 208
Score = 31.1 bits (67), Expect = 0.35
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 182 CILDAEFGAHCVRCSTCTVAGTPVCAVDGKTYAGAC 289
C + E C+ C T CA+DG+ Y+G C
Sbjct: 114 CSSEHETLVSCINCDFLVTKVTEKCALDGQKYSGLC 149
>L21758-1|AAA16827.1| 264|Caenorhabditis elegans osteonectin
protein.
Length = 264
Score = 30.7 bits (66), Expect = 0.46
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Frame = +2
Query: 149 CEGVRCGGEKRCILDAEFGAHCVRCSTC-TVAGTP---VCAVDGKTYAGACALRMAVC 310
CE +CG K C++ + C S C + G P VCA + +T+ C L C
Sbjct: 53 CEDHQCGWGKECVVGKKGEPTCECISKCPELDGDPMDKVCANNNQTFTSLCDLYRERC 110
>AF036692-3|AAB88325.1| 264|Caenorhabditis elegans Osteonectin
(sparc) related protein1 protein.
Length = 264
Score = 30.7 bits (66), Expect = 0.46
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Frame = +2
Query: 149 CEGVRCGGEKRCILDAEFGAHCVRCSTC-TVAGTP---VCAVDGKTYAGACALRMAVC 310
CE +CG K C++ + C S C + G P VCA + +T+ C L C
Sbjct: 53 CEDHQCGWGKECVVGKKGEPTCECISKCPELDGDPMDKVCANNNQTFTSLCDLYRERC 110
>Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical
protein R107.8 protein.
Length = 1429
Score = 30.3 bits (65), Expect = 0.61
Identities = 8/32 (25%), Positives = 17/32 (53%)
Frame = +2
Query: 149 CEGVRCGGEKRCILDAEFGAHCVRCSTCTVAG 244
C+ +CG +++C+ D ++ C C + G
Sbjct: 64 CDVSKCGADEKCVFDKDYRMETCVCKDCDING 95
>M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein (
C.elegans homeotic lin-12 protein gene, complete cds. ).
Length = 1429
Score = 30.3 bits (65), Expect = 0.61
Identities = 8/32 (25%), Positives = 17/32 (53%)
Frame = +2
Query: 149 CEGVRCGGEKRCILDAEFGAHCVRCSTCTVAG 244
C+ +CG +++C+ D ++ C C + G
Sbjct: 64 CDVSKCGADEKCVFDKDYRMETCVCKDCDING 95
>U88173-9|AAK21384.3| 320|Caenorhabditis elegans Hypothetical
protein F46F11.7 protein.
Length = 320
Score = 29.9 bits (64), Expect = 0.81
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 348 RCLANATCTSISCGPNPRCVVGRASGA 428
+C N CTSI C P CV G+ A
Sbjct: 174 QCYPNTQCTSIYCEPGTYCVEGQCLSA 200
>U64845-2|AAC48031.2| 980|Caenorhabditis elegans Hypothetical
protein F45F2.10 protein.
Length = 980
Score = 27.9 bits (59), Expect = 3.3
Identities = 16/49 (32%), Positives = 19/49 (38%)
Frame = -1
Query: 258 AHTGVPATVHVLHRTQCAPNSASRMHLFSPPQRTPSHVSVIRTSRPWHG 112
A TG P V VL R N + +H H S+I WHG
Sbjct: 531 AMTGSPCQVDVLLRNGAPLNELNDLHKSPVALAIRRHTSLIARQLMWHG 579
>Z98877-12|CAB63409.1| 528|Caenorhabditis elegans Hypothetical
protein Y69H2.12 protein.
Length = 528
Score = 27.5 bits (58), Expect = 4.3
Identities = 18/72 (25%), Positives = 21/72 (29%)
Frame = +2
Query: 104 YPGPCQGRLVRITDTCEGVRCGGEKRCILDAEFGAHCVRCSTCTVAGTPVCAVDGKTYAG 283
YP C TC GG L FG +C + C A V T G
Sbjct: 397 YPDVCTSSTCLYGGTCTETSSGGYTCSCLSQYFGTNCEEINRCNYADPCVNGDCQTTVDG 456
Query: 284 ACALRMAVCERG 319
C+ G
Sbjct: 457 ITTNYTCTCDSG 468
>Z35604-2|CAA84677.1| 809|Caenorhabditis elegans Hypothetical
protein ZK1058.2 protein.
Length = 809
Score = 27.5 bits (58), Expect = 4.3
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 92 LVMDYPGPC-QGRLVRITDTCEGVRCGGEKRCILDAEFGAHCV 217
L + Y C G ++ T+ CEG+R G E + + E HC+
Sbjct: 405 LKLTYRSMCLDGTTLKDTNVCEGIRVGDEVQFEVTLE-NTHCI 446
>U19744-1|AAA85704.1| 809|Caenorhabditis elegans integrin beta
pat-3 protein.
Length = 809
Score = 27.5 bits (58), Expect = 4.3
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 92 LVMDYPGPC-QGRLVRITDTCEGVRCGGEKRCILDAEFGAHCV 217
L + Y C G ++ T+ CEG+R G E + + E HC+
Sbjct: 405 LKLTYRSMCLDGTTLKDTNVCEGIRVGDEVQFEVTLE-NTHCI 446
>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
protein Y47H9C.4c protein.
Length = 1045
Score = 27.5 bits (58), Expect = 4.3
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 152 EGVRCGGEKRCILDAE-FGAHCVRCSTCTVAGTPVCA 259
+G +C E++C DAE +GA C + TC T +CA
Sbjct: 362 KGPKCD-ERKC--DAEQYGADCSKTCTCVRENTLMCA 395
>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
protein Y47H9C.4b protein.
Length = 1070
Score = 27.5 bits (58), Expect = 4.3
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 152 EGVRCGGEKRCILDAE-FGAHCVRCSTCTVAGTPVCA 259
+G +C E++C DAE +GA C + TC T +CA
Sbjct: 362 KGPKCD-ERKC--DAEQYGADCSKTCTCVRENTLMCA 395
>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
protein Y47H9C.4a protein.
Length = 1111
Score = 27.5 bits (58), Expect = 4.3
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 152 EGVRCGGEKRCILDAE-FGAHCVRCSTCTVAGTPVCA 259
+G +C E++C DAE +GA C + TC T +CA
Sbjct: 362 KGPKCD-ERKC--DAEQYGADCSKTCTCVRENTLMCA 395
>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
Length = 1111
Score = 27.5 bits (58), Expect = 4.3
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 152 EGVRCGGEKRCILDAE-FGAHCVRCSTCTVAGTPVCA 259
+G +C E++C DAE +GA C + TC T +CA
Sbjct: 362 KGPKCD-ERKC--DAEQYGADCSKTCTCVRENTLMCA 395
>Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical protein
C18D4.2a protein.
Length = 1817
Score = 27.1 bits (57), Expect = 5.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 305 VCERGKALPLAYKVTLFSKRNMHFYIVWTESKVCS 409
+ ERG+ PLA T FSK + + W + ++CS
Sbjct: 1465 IFERGQYYPLA---TAFSKSSKQNVVEWYQKRLCS 1496
>Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical protein
C18D4.2a protein.
Length = 1817
Score = 27.1 bits (57), Expect = 5.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 305 VCERGKALPLAYKVTLFSKRNMHFYIVWTESKVCS 409
+ ERG+ PLA T FSK + + W + ++CS
Sbjct: 1465 IFERGQYYPLA---TAFSKSSKQNVVEWYQKRLCS 1496
>AF039048-1|AAB94237.2| 480|Caenorhabditis elegans Cell division
cycle related protein25.2 protein.
Length = 480
Score = 27.1 bits (57), Expect = 5.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 219 RTQCAPNSASRMHLFSPPQRTPSH 148
RT P ASR +LFS P +P++
Sbjct: 431 RTPAVPRIASRRNLFSDPSHSPTN 454
>Z81117-4|CAB03319.1| 249|Caenorhabditis elegans Hypothetical
protein T06E6.10 protein.
Length = 249
Score = 26.6 bits (56), Expect = 7.5
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
Frame = +2
Query: 146 TCEGVRCGGEKRCIL-----DAEFGAHCVR---CSTCTVAGTPVCAVDGKTYAGACALRM 301
TC VRCG C + D E G C+ C+T + A T C + T A +
Sbjct: 22 TCANVRCGSPGGCGMVASCPDCEPGPECLEKNDCNTKSCAPTEECVLVQVTCIMAPCYPI 81
Query: 302 AVCERGK 322
A C K
Sbjct: 82 AECRPKK 88
>U58750-13|AAB00653.1| 616|Caenorhabditis elegans Hypothetical
protein F55G1.13 protein.
Length = 616
Score = 26.6 bits (56), Expect = 7.5
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = +2
Query: 149 CEGVRCGGEKRCILDAEFGAHCVRCST-CTVA--GTPVCAVDGKTYAGACA 292
C + CG + D + G +C+ ST TVA G P C + Y G C+
Sbjct: 330 CASIDCGVGTCGVTDDQIGYYCLCASTNQTVACVGNP-CTSEPCLYGGTCS 379
>AC024824-2|AAK85502.1| 740|Caenorhabditis elegans Hypothetical
protein Y55B1BR.2 protein.
Length = 740
Score = 26.6 bits (56), Expect = 7.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 231 HVLHRTQCAPNSASRMHLFSPPQRTPSHVSV 139
H L R++ P + + L +PP +PSHV V
Sbjct: 41 HGLIRSKMKPRPSPFVTLQAPPHESPSHVPV 71
>Z36237-1|CAA85271.2| 619|Caenorhabditis elegans Hypothetical
protein C48D5.1 protein.
Length = 619
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/36 (27%), Positives = 14/36 (38%)
Frame = +2
Query: 116 CQGRLVRITDTCEGVRCGGEKRCILDAEFGAHCVRC 223
C+G R C G K C +D + + C C
Sbjct: 288 CKGFFKRTVQKNSKYTCAGNKTCPIDKRYRSRCQYC 323
>U37548-4|AAA79200.2| 373|Caenorhabditis elegans Hypothetical
protein C54D2.1 protein.
Length = 373
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = +2
Query: 119 QGRLVRITDTCEGVRCGGEKRCILDAEFGAHCVRCS 226
QG++VRI G +C +C+ + + RC+
Sbjct: 323 QGQIVRINFVIPGQQCNSNNQCLAGSYCNSGTCRCA 358
>U13076-1|AAA96984.1| 463|Caenorhabditis elegans steroid hormone
receptor familymember CNR8 protein.
Length = 463
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/36 (27%), Positives = 14/36 (38%)
Frame = +2
Query: 116 CQGRLVRITDTCEGVRCGGEKRCILDAEFGAHCVRC 223
C+G R C G K C +D + + C C
Sbjct: 132 CKGFFKRTVQKNSKYTCAGNKTCPIDKRYRSRCQYC 167
>AY204167-1|AAO39171.1| 619|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 619
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/36 (27%), Positives = 14/36 (38%)
Frame = +2
Query: 116 CQGRLVRITDTCEGVRCGGEKRCILDAEFGAHCVRC 223
C+G R C G K C +D + + C C
Sbjct: 288 CKGFFKRTVQKNSKYTCAGNKTCPIDKRYRSRCQYC 323
>AF273770-1|AAG15119.1| 469|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 469
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/36 (27%), Positives = 14/36 (38%)
Frame = +2
Query: 116 CQGRLVRITDTCEGVRCGGEKRCILDAEFGAHCVRC 223
C+G R C G K C +D + + C C
Sbjct: 138 CKGFFKRTVQKNSKYTCAGNKTCPIDKRYRSRCQYC 173
>AF083224-1|AAD03682.1| 619|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 619
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/36 (27%), Positives = 14/36 (38%)
Frame = +2
Query: 116 CQGRLVRITDTCEGVRCGGEKRCILDAEFGAHCVRC 223
C+G R C G K C +D + + C C
Sbjct: 288 CKGFFKRTVQKNSKYTCAGNKTCPIDKRYRSRCQYC 323
>AF039042-9|AAC48245.1| 431|Caenorhabditis elegans Hypothetical
protein ZK697.2 protein.
Length = 431
Score = 26.2 bits (55), Expect = 10.0
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Frame = +2
Query: 116 CQGRLVRITDTCEGVRCGGEKRCILDAEFGAHCVRC--STCTVAGTPVCAVDGKTYAG 283
C R T + C GEK C ++ F +C +C + C AG V G G
Sbjct: 27 CAAFFRRTVKTGQIYSCPGEKTCEINHVFRQNCRQCRLAKCLKAGMQEELVQGHKMNG 84
>AC024791-20|AAO12400.1| 574|Caenorhabditis elegans Hypothetical
protein Y47G6A.5b protein.
Length = 574
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 52 STATACLPPPCQTFSHGLSGTMPRPACP 135
S A PPP + + +S T PRP P
Sbjct: 7 SVAVPAKPPPLRPSTQSVSSTDPRPPIP 34
>AC024791-19|AAF60657.2| 618|Caenorhabditis elegans Hypothetical
protein Y47G6A.5a protein.
Length = 618
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 52 STATACLPPPCQTFSHGLSGTMPRPACP 135
S A PPP + + +S T PRP P
Sbjct: 51 SVAVPAKPPPLRPSTQSVSSTDPRPPIP 78
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,730,346
Number of Sequences: 27780
Number of extensions: 196280
Number of successful extensions: 696
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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