Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_L05
         (429 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              46   2e-07
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.4  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   2.5  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   2.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   5.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   5.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   5.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   5.8  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 46.0 bits (104), Expect = 2e-07
 Identities = 26/66 (39%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = +2

Query: 134 RITDTCEGVRCGGEKRCILDAEFG-AHCVRCSTCTVAGTPVCAVDGKTYAGACALRMAVC 310
           R  D C    CG  K C L      A CV    C     PVCA +GK YA  C L  A C
Sbjct: 77  RSIDPCASKYCGIGKECELSPNSTIAVCVCMRKCPRRHRPVCASNGKIYANHCELHRAAC 136

Query: 311 ERGKAL 328
             G +L
Sbjct: 137 HSGSSL 142


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 198 SASRMHLFSPPQRTPS 151
           S   +HL SPP R+PS
Sbjct: 669 SQLHLHLTSPPARSPS 684


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 11/36 (30%), Positives = 13/36 (36%)
 Frame = +2

Query: 116 CQGRLVRITDTCEGVRCGGEKRCILDAEFGAHCVRC 223
           C+G   R         C  EK CI+D      C  C
Sbjct: 130 CKGFFKRTVRKDLSYACREEKSCIIDKRQRNRCQYC 165


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 11/36 (30%), Positives = 13/36 (36%)
 Frame = +2

Query: 116 CQGRLVRITDTCEGVRCGGEKRCILDAEFGAHCVRC 223
           C+G   R         C  EK CI+D      C  C
Sbjct: 130 CKGFFKRTVRKDLSYACREEKSCIIDKRQRNRCQYC 165


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 366 TCTSISCGPNP 398
           TCT+  CGPNP
Sbjct: 426 TCTN--CGPNP 434


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 366 TCTSISCGPNP 398
           TCT+  CGPNP
Sbjct: 412 TCTN--CGPNP 420


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 366 TCTSISCGPNP 398
           TCT+  CGPNP
Sbjct: 446 TCTN--CGPNP 454


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 366 TCTSISCGPNP 398
           TCT+  CGPNP
Sbjct: 395 TCTN--CGPNP 403


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,646
Number of Sequences: 438
Number of extensions: 2296
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)