Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_L04
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    29   0.53 
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    28   0.92 
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    27   1.2  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    27   2.1  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   3.7  
SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces...    25   4.9  
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph...    25   8.6  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    25   8.6  

>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 28.7 bits (61), Expect = 0.53
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 410 EYKDYKYAPLKQSDFDKSKPKIGHYTQMAWSES 508
           EY + + APL QS +   +P+IG +  +A+  +
Sbjct: 27  EYGEVETAPLSQSSWIYRRPRIGRFKSLAYGSA 59


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 113 TCHANKSKNFVNGHNYRRQLLAKGQVSGHPAATE 214
           TC  +  +    G N+RRQLL  G+  G  AA+E
Sbjct: 842 TCRMDDLRLDEQGDNWRRQLLENGKSFGLEAASE 875


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +2

Query: 332 ENLYWYSTTDSTYKLNVDNAMESWFNEYKDYKYAPLKQSDFDKS 463
           +N YW  TTDS ++L V+       NE ++     L++ DF+K+
Sbjct: 356 KNTYWLYTTDSLHELVVN-------NETREASLVFLEKGDFEKA 392


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -2

Query: 459 LSKSLCFKGAXXXXXXXLNQLSIALSTFSLYVLSVVEYQ 343
           L  S+ F+G+       LNQL+I L++ S Y  S + ++
Sbjct: 15  LRSSIFFQGSSRILTFFLNQLTIRLTSPSAYAFSSIHFE 53


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 96   YYGRVQXYDHCQNKKRAYGHCSVVCYHE 13
            Y+  V+ Y  C+N     GH  V+ Y E
Sbjct: 1771 YHKAVEIYSECENTHYYLGHHRVLMYEE 1798


>SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 132 PRISSTDTIIGDNYW 176
           P I+  DT  GDNYW
Sbjct: 227 PFITQCDTATGDNYW 241


>SPBC15D4.04 |gpt2|gpt,
           alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
           acetylglucosaminephosphotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 485 CNGLFWV*TCRSHSVSREHICNLYI 411
           CN LF+V + ++    R H+ +LY+
Sbjct: 237 CNDLFYVLSPKNKDALRAHLLSLYL 261


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1323

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = +2

Query: 125  NKSKNFVNGHNYRRQL---LAKGQVSGHPAATEMKYMVWDEE 241
            NK+      HNY R     L  G++ GH + TE K  + DEE
Sbjct: 1010 NKNAEVSAKHNYYRLAKVWLMLGRLLGHLSRTENKDHINDEE 1051


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,144,615
Number of Sequences: 5004
Number of extensions: 42454
Number of successful extensions: 104
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)