Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_L04
(508 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 25 0.60
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 22 3.2
DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex det... 22 4.2
DQ011227-1|AAY63896.1| 484|Apis mellifera Amt-1-like protein pr... 22 4.2
AY661557-1|AAT74557.1| 411|Apis mellifera yellow-f-like protein... 22 4.2
AB253415-1|BAE86926.1| 588|Apis mellifera alpha-glucosidase pro... 22 4.2
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.7
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.7
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.7
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.7
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.7
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.7
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 9.7
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 9.7
AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellif... 21 9.7
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 24.6 bits (51), Expect = 0.60
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = -2
Query: 465 LDLSKSLCFKGAXXXXXXXLNQLSIALSTFSLYVLSVVEYQYKF---SPVW 322
LD+ + F G + S+AL+ FSL + S++ Y + +P W
Sbjct: 290 LDVQWRIPFNGIQMPNLMVFYEKSLALAAFSLMLTSILRYLQELHVDAPTW 340
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 22.2 bits (45), Expect = 3.2
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +1
Query: 85 TSIVSLHLLNLSCKQIQEF 141
TSI SL LLNLS I+ F
Sbjct: 546 TSIASLLLLNLSENHIEWF 564
>DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.8 bits (44), Expect = 4.2
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = -3
Query: 371 CMCYRSLNTNTNFHQSGIFPIPKSCPGY 288
C YR L N N+ + P+P C +
Sbjct: 101 CNNYRKLYYNINYIEQIPIPVPIYCGNF 128
>DQ011227-1|AAY63896.1| 484|Apis mellifera Amt-1-like protein
protein.
Length = 484
Score = 21.8 bits (44), Expect = 4.2
Identities = 9/28 (32%), Positives = 12/28 (42%)
Frame = -3
Query: 377 SVCMCYRSLNTNTNFHQSGIFPIPKSCP 294
S C L + +GI P+P CP
Sbjct: 194 SALACAIMLGPRLGRYDNGIDPLPLGCP 221
>AY661557-1|AAT74557.1| 411|Apis mellifera yellow-f-like protein
protein.
Length = 411
Score = 21.8 bits (44), Expect = 4.2
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -2
Query: 405 NQLSIALSTFSLYVLSVVEYQYKFS 331
N LSI ST ++YVLS Q FS
Sbjct: 349 NDLSIDRSTNTMYVLSDNFQQLLFS 373
>AB253415-1|BAE86926.1| 588|Apis mellifera alpha-glucosidase
protein.
Length = 588
Score = 21.8 bits (44), Expect = 4.2
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +2
Query: 368 YKLNVDNAMESWFNEYKDYKYAPLKQSDFDKSKP 469
++++++N + N+YKDY Y + DK P
Sbjct: 130 FQMSINNTNNNNTNKYKDY-YIWVDPVKDDKGNP 162
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.7
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +3
Query: 138 ISSTDTIIGDNYWLRVRYQDTLLQLK*NIWCGMKN 242
+ + I+ N WL++ + D LQ + + G+K+
Sbjct: 26 VDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 60
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.7
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +3
Query: 138 ISSTDTIIGDNYWLRVRYQDTLLQLK*NIWCGMKN 242
+ + I+ N WL++ + D LQ + + G+K+
Sbjct: 26 VDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 60
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.7
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +3
Query: 138 ISSTDTIIGDNYWLRVRYQDTLLQLK*NIWCGMKN 242
+ + I+ N WL++ + D LQ + + G+K+
Sbjct: 26 VDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 60
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.7
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +3
Query: 138 ISSTDTIIGDNYWLRVRYQDTLLQLK*NIWCGMKN 242
+ + I+ N WL++ + D LQ + + G+K+
Sbjct: 26 VDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 60
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.7
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +3
Query: 138 ISSTDTIIGDNYWLRVRYQDTLLQLK*NIWCGMKN 242
+ + I+ N WL++ + D LQ + + G+K+
Sbjct: 26 VDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 60
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.7
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +3
Query: 138 ISSTDTIIGDNYWLRVRYQDTLLQLK*NIWCGMKN 242
+ + I+ N WL++ + D LQ + + G+K+
Sbjct: 26 VDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 60
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 20.6 bits (41), Expect = 9.7
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +3
Query: 138 ISSTDTIIGDNYWLRVRYQDTLLQLK*NIWCGMKN 242
+ + I+ N WL++ + D LQ + + G+K+
Sbjct: 94 VDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 128
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 20.6 bits (41), Expect = 9.7
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +3
Query: 138 ISSTDTIIGDNYWLRVRYQDTLLQLK*NIWCGMKN 242
+ + I+ N WL++ + D LQ + + G+K+
Sbjct: 94 VDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 128
>AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellifera
ORF for hypotheticalprotein. ).
Length = 998
Score = 20.6 bits (41), Expect = 9.7
Identities = 7/17 (41%), Positives = 9/17 (52%)
Frame = -1
Query: 502 RPSHLCVMAYFGFRLVE 452
RP H + Y G +VE
Sbjct: 334 RPDHAVLCVYMGLSMVE 350
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,521
Number of Sequences: 438
Number of extensions: 3063
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -